Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPG39_RS00265 | Genome accession | NZ_CP094059 |
| Coordinates | 58527..59102 (+) | Length | 191 a.a. |
| NCBI ID | WP_245080423.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe122 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 53527..64102
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG39_RS00240 (MPG39_00240) | uvrD | 54218..56263 (+) | 2046 | WP_245080419.1 | DNA helicase UvrD | - |
| MPG39_RS00245 (MPG39_00245) | flgA | 56260..56916 (+) | 657 | WP_245080421.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPG39_RS00250 (MPG39_00250) | - | 56926..57489 (+) | 564 | WP_000780121.1 | UbiX family flavin prenyltransferase | - |
| MPG39_RS00255 (MPG39_00255) | coaD | 57489..57962 (+) | 474 | WP_001169259.1 | pantetheine-phosphate adenylyltransferase | - |
| MPG39_RS00260 (MPG39_00260) | tmk | 57964..58539 (+) | 576 | WP_245080422.1 | dTMP kinase | - |
| MPG39_RS00265 (MPG39_00265) | comFC | 58527..59102 (+) | 576 | WP_245080423.1 | ComF family protein | Machinery gene |
| MPG39_RS00270 (MPG39_00270) | - | 59135..61174 (+) | 2040 | WP_245080425.1 | N-6 DNA methylase | - |
| MPG39_RS00275 (MPG39_00275) | - | 61171..61827 (+) | 657 | WP_245080427.1 | restriction endonuclease subunit S | - |
| MPG39_RS00280 (MPG39_00280) | - | 61854..62411 (+) | 558 | WP_245080429.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21421.10 Da Isoelectric Point: 9.5882
>NTDB_id=666216 MPG39_RS00265 WP_245080423.1 58527..59102(+) (comFC) [Helicobacter pylori strain Hpfe122]
MRCLTCLKLSFKPLCPNCLKDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLKDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=666216 MPG39_RS00265 WP_245080423.1 58527..59102(+) (comFC) [Helicobacter pylori strain Hpfe122]
ATGCGTTGTTTGACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAAGGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCACGGAGTTTGTGAGAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAAGGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCACGGAGTTTGTGAGAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |