Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPG08_RS00260 | Genome accession | NZ_CP094058 |
| Coordinates | 58463..59038 (+) | Length | 191 a.a. |
| NCBI ID | WP_245042372.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe123 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 53463..64038
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG08_RS00235 (MPG08_00235) | uvrD | 54154..56199 (+) | 2046 | WP_245042364.1 | DNA helicase UvrD | - |
| MPG08_RS00240 (MPG08_00240) | flgA | 56196..56852 (+) | 657 | WP_245042366.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPG08_RS00245 (MPG08_00245) | - | 56862..57425 (+) | 564 | WP_000780122.1 | UbiX family flavin prenyltransferase | - |
| MPG08_RS00250 (MPG08_00250) | coaD | 57425..57898 (+) | 474 | WP_245042368.1 | pantetheine-phosphate adenylyltransferase | - |
| MPG08_RS00255 (MPG08_00255) | tmk | 57900..58475 (+) | 576 | WP_245042370.1 | dTMP kinase | - |
| MPG08_RS00260 (MPG08_00260) | comFC | 58463..59038 (+) | 576 | WP_245042372.1 | ComF family protein | Machinery gene |
| MPG08_RS00265 (MPG08_00265) | - | 59071..61110 (+) | 2040 | WP_245042374.1 | N-6 DNA methylase | - |
| MPG08_RS00270 (MPG08_00270) | - | 61107..62336 (+) | 1230 | WP_245042376.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21336.93 Da Isoelectric Point: 9.0940
>NTDB_id=666196 MPG08_RS00260 WP_245042372.1 58463..59038(+) (comFC) [Helicobacter pylori strain Hpfe123]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=666196 MPG08_RS00260 WP_245042372.1 58463..59038(+) (comFC) [Helicobacter pylori strain Hpfe123]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAACCCCTTTGCCCAAACTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCTTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAACCCCTTTGCCCAAACTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCTTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |