Detailed information NTG0666158

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPF85_RS00690
• Genome accession: NZ_CP094054
• Coordinates: 147363..148325 (+)
• Length: 320 a.a.
• NCBI ID: WP_245013588.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe125
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 142363..153325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF85_RS00660 (MPF85_00660)	panD	143767..144117 (+)	351	WP_245013585.1	aspartate 1-decarboxylase	-
MPF85_RS00665 (MPF85_00665)	-	144128..144421 (+)	294	WP_245013586.1	YbaB/EbfC family nucleoid-associated protein	-
MPF85_RS00670 (MPF85_00670)	-	144421..145425 (+)	1005	WP_245013902.1	PDZ domain-containing protein	-
MPF85_RS00675 (MPF85_00675)	comB6	145433..146488 (+)	1056	WP_245013903.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF85_RS00680 (MPF85_00680)	comB7	146504..146629 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPF85_RS00685 (MPF85_00685)	comB8	146626..147363 (+)	738	WP_245013587.1	virB8 family protein	Machinery gene
MPF85_RS00690 (MPF85_00690)	comB9	147363..148325 (+)	963	WP_245013588.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF85_RS00695 (MPF85_00695)	comB10	148318..149454 (+)	1137	WP_050850644.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF85_RS00700 (MPF85_00700)	-	149524..150936 (+)	1413	WP_245013589.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF85_RS00705 (MPF85_00705)	gmd	150950..152095 (+)	1146	WP_245013590.1	GDP-mannose 4,6-dehydratase	-
MPF85_RS00710 (MPF85_00710)	-	152088..153020 (+)	933	WP_245013591.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36899.49 Da
• Isoelectric Point: 9.3756

>NTDB_id=666158 MPF85_RS00690 WP_245013588.1 147363..148325(+) (comB9) [Helicobacter pylori strain Hpfe125]
MRKVLCTLVGFLLAFSTLKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILFIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=666158 MPF85_RS00690 WP_245013588.1 147363..148325(+) (comB9) [Helicobacter pylori strain Hpfe125]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGCTTTTAGCACTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCTATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGTTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACCTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.934