Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB6   Type   Machinery gene
Locus tag   MPF85_RS00675 Genome accession   NZ_CP094054
Coordinates   145433..146488 (+) Length   351 a.a.
NCBI ID   WP_245013903.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe125     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 140433..151488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF85_RS00645 (MPF85_00645) - 140847..141260 (+) 414 WP_001023005.1 universal stress protein -
  MPF85_RS00650 (MPF85_00650) - 141280..141555 (+) 276 WP_000784933.1 ATP-dependent Clp protease adaptor ClpS -
  MPF85_RS00655 (MPF85_00655) - 141555..143777 (+) 2223 WP_245013584.1 ATP-dependent Clp protease ATP-binding subunit -
  MPF85_RS00660 (MPF85_00660) panD 143767..144117 (+) 351 WP_245013585.1 aspartate 1-decarboxylase -
  MPF85_RS00665 (MPF85_00665) - 144128..144421 (+) 294 WP_245013586.1 YbaB/EbfC family nucleoid-associated protein -
  MPF85_RS00670 (MPF85_00670) - 144421..145425 (+) 1005 WP_245013902.1 PDZ domain-containing protein -
  MPF85_RS00675 (MPF85_00675) comB6 145433..146488 (+) 1056 WP_245013903.1 P-type conjugative transfer protein TrbL Machinery gene
  MPF85_RS00680 (MPF85_00680) comB7 146504..146629 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPF85_RS00685 (MPF85_00685) comB8 146626..147363 (+) 738 WP_245013587.1 virB8 family protein Machinery gene
  MPF85_RS00690 (MPF85_00690) comB9 147363..148325 (+) 963 WP_245013588.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPF85_RS00695 (MPF85_00695) comB10 148318..149454 (+) 1137 WP_050850644.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF85_RS00700 (MPF85_00700) - 149524..150936 (+) 1413 WP_245013589.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 39883.82 Da        Isoelectric Point: 8.8165

>NTDB_id=666155 MPF85_RS00675 WP_245013903.1 145433..146488(+) (comB6) [Helicobacter pylori strain Hpfe125]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSTLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=666155 MPF85_RS00675 WP_245013903.1 145433..146488(+) (comB6) [Helicobacter pylori strain Hpfe125]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGTTAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAATCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACTAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

TrbL/VirB6 plasmid conjugal transfer protein (TrbL)

(43-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB6 Helicobacter pylori 26695

96.866

100

0.969