Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPF85_RS00255 | Genome accession | NZ_CP094054 |
| Coordinates | 58392..58967 (+) | Length | 191 a.a. |
| NCBI ID | WP_245013546.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe125 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 53392..63967
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF85_RS00230 (MPF85_00230) | uvrD | 54083..56128 (+) | 2046 | WP_245013543.1 | DNA helicase UvrD | - |
| MPF85_RS00235 (MPF85_00235) | flgA | 56125..56781 (+) | 657 | WP_245013544.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPF85_RS00240 (MPF85_00240) | - | 56791..57354 (+) | 564 | WP_220848213.1 | UbiX family flavin prenyltransferase | - |
| MPF85_RS00245 (MPF85_00245) | coaD | 57354..57827 (+) | 474 | WP_015429486.1 | pantetheine-phosphate adenylyltransferase | - |
| MPF85_RS00250 (MPF85_00250) | tmk | 57829..58404 (+) | 576 | WP_245013545.1 | dTMP kinase | - |
| MPF85_RS00255 (MPF85_00255) | comFC | 58392..58967 (+) | 576 | WP_245013546.1 | ComF family protein | Machinery gene |
| MPF85_RS00260 (MPF85_00260) | - | 59000..61039 (+) | 2040 | WP_245013547.1 | N-6 DNA methylase | - |
| MPF85_RS00265 (MPF85_00265) | - | 61036..61674 (+) | 639 | WP_245013548.1 | restriction endonuclease subunit S | - |
| MPF85_RS00270 (MPF85_00270) | - | 61701..62258 (+) | 558 | WP_245013549.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21441.16 Da Isoelectric Point: 9.4390
>NTDB_id=666154 MPF85_RS00255 WP_245013546.1 58392..58967(+) (comFC) [Helicobacter pylori strain Hpfe125]
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYVLIGSRILPLLSQKAGTEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSATLLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYVLIGSRILPLLSQKAGTEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSATLLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=666154 MPF85_RS00255 WP_245013546.1 58392..58967(+) (comFC) [Helicobacter pylori strain Hpfe125]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATATG
TGCTGATTGGCTCTCGCATTTTGCCCTTACTTTCTCAAAAAGCCGGCACGGAGTTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCACGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCGACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGACAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACTGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCATTTTGCAATCGCACTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATATG
TGCTGATTGGCTCTCGCATTTTGCCCTTACTTTCTCAAAAAGCCGGCACGGAGTTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCACGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCGACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGACAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACTGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCATTTTGCAATCGCACTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
92.147 |
100 |
0.921 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
38.144 |
100 |
0.387 |