Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPF87_RS00285 | Genome accession | NZ_CP094052 |
| Coordinates | 61972..62547 (+) | Length | 191 a.a. |
| NCBI ID | WP_245012685.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe126 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 56972..67547
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF87_RS00260 (MPF87_00260) | uvrD | 57663..59708 (+) | 2046 | WP_245012682.1 | DNA helicase UvrD | - |
| MPF87_RS00265 (MPF87_00265) | flgA | 59705..60361 (+) | 657 | WP_245012683.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPF87_RS00270 (MPF87_00270) | - | 60371..60934 (+) | 564 | WP_029567589.1 | UbiX family flavin prenyltransferase | - |
| MPF87_RS00275 (MPF87_00275) | coaD | 60934..61407 (+) | 474 | WP_001169259.1 | pantetheine-phosphate adenylyltransferase | - |
| MPF87_RS00280 (MPF87_00280) | tmk | 61409..61984 (+) | 576 | WP_245012684.1 | dTMP kinase | - |
| MPF87_RS00285 (MPF87_00285) | comFC | 61972..62547 (+) | 576 | WP_245012685.1 | ComF family protein | Machinery gene |
| MPF87_RS00290 (MPF87_00290) | - | 62580..64619 (+) | 2040 | WP_245012686.1 | N-6 DNA methylase | - |
| MPF87_RS00295 (MPF87_00295) | - | 64616..65293 (+) | 678 | WP_245012687.1 | restriction endonuclease subunit S | - |
| MPF87_RS00300 (MPF87_00300) | - | 65320..65862 (+) | 543 | WP_245012688.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21323.93 Da Isoelectric Point: 8.8864
>NTDB_id=666130 MPF87_RS00285 WP_245012685.1 61972..62547(+) (comFC) [Helicobacter pylori strain Hpfe126]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYVLIGSRILPLLSQKAGAEFVKILQEKG
LTIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNTVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYVLIGSRILPLLSQKAGAEFVKILQEKG
LTIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNTVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=666130 MPF87_RS00285 WP_245012685.1 61972..62547(+) (comFC) [Helicobacter pylori strain Hpfe126]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAACTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
TGCTGATTGGCTCTCGCATTTTGCCCTTACTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTTCTAATACTGTTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAACTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
TGCTGATTGGCTCTCGCATTTTGCCCTTACTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTTCTAATACTGTTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |