Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MPG10_RS00325 Genome accession   NZ_CP094051
Coordinates   68182..68757 (+) Length   191 a.a.
NCBI ID   WP_231215902.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe127     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 63182..73757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG10_RS00300 (MPG10_00300) uvrD 63873..65918 (+) 2046 WP_245061229.1 DNA helicase UvrD -
  MPG10_RS00305 (MPG10_00305) flgA 65915..66571 (+) 657 WP_245061231.1 flagellar basal body P-ring formation chaperone FlgA -
  MPG10_RS00310 (MPG10_00310) - 66581..67144 (+) 564 WP_000780124.1 UbiX family flavin prenyltransferase -
  MPG10_RS00315 (MPG10_00315) coaD 67144..67617 (+) 474 WP_212854690.1 pantetheine-phosphate adenylyltransferase -
  MPG10_RS00320 (MPG10_00320) tmk 67619..68194 (+) 576 WP_245061233.1 dTMP kinase -
  MPG10_RS00325 (MPG10_00325) comFC 68182..68757 (+) 576 WP_231215902.1 ComF family protein Machinery gene
  MPG10_RS00330 (MPG10_00330) - 68790..69176 (+) 387 Protein_64 VRR-NUC domain-containing protein -
  MPG10_RS00335 (MPG10_00335) - 69167..69934 (-) 768 WP_245061235.1 Eco47II family restriction endonuclease -
  MPG10_RS00340 (MPG10_00340) dcm 69903..70934 (-) 1032 WP_180433721.1 DNA (cytosine-5-)-methyltransferase -
  MPG10_RS00345 (MPG10_00345) - 70984..71541 (+) 558 WP_342369553.1 restriction endonuclease subunit S -
  MPG10_RS00350 (MPG10_00350) - 71568..72125 (+) 558 WP_245061237.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21335.99 Da        Isoelectric Point: 9.4455

>NTDB_id=666110 MPG10_RS00325 WP_231215902.1 68182..68757(+) (comFC) [Helicobacter pylori strain Hpfe127]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=666110 MPG10_RS00325 WP_231215902.1 68182..68757(+) (comFC) [Helicobacter pylori strain Hpfe127]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGACAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCATTTTGCGATCGCTCTTTG
CAGTGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.288

100

0.953
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.979

100

0.372