Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MN200_RS15030 Genome accession   NZ_CP093968
Coordinates   3069048..3069602 (-) Length   184 a.a.
NCBI ID   WP_081313273.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3064048..3074602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS15015 (MN200_15015) - 3064963..3066261 (+) 1299 WP_242759797.1 dicarboxylate/amino acid:cation symporter -
  MN200_RS15020 (MN200_15020) - 3066396..3067286 (-) 891 WP_218288612.1 LysR substrate-binding domain-containing protein -
  MN200_RS15025 (MN200_15025) - 3067421..3068839 (+) 1419 WP_242759798.1 aspartate ammonia-lyase -
  MN200_RS15030 (MN200_15030) ssb 3069048..3069602 (-) 555 WP_081313273.1 single-stranded DNA-binding protein Machinery gene
  MN200_RS15035 (MN200_15035) - 3069850..3070332 (-) 483 WP_058870464.1 hypothetical protein -
  MN200_RS15040 (MN200_15040) - 3070407..3070625 (+) 219 WP_005180668.1 helix-turn-helix transcriptional regulator -
  MN200_RS15045 (MN200_15045) - 3070671..3071183 (-) 513 WP_201784311.1 SprT family zinc-dependent metalloprotease -
  MN200_RS15050 (MN200_15050) - 3071231..3071935 (-) 705 WP_001067784.1 IS6-like element IS1006 family transposase -
  MN200_RS15055 (MN200_15055) - 3072093..3072992 (-) 900 WP_004733183.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20706.51 Da        Isoelectric Point: 8.3350

>NTDB_id=666107 MN200_RS15030 WP_081313273.1 3069048..3069602(-) (ssb) [Acinetobacter sp. LUNF3]
MDTATYSKTNMSNVIVVGTLGKDPETKTFPNGGSLTQFSMATSESWTDKSTGEKKEQTEWHRIVLSNRLGEIAQQYLRKG
SKVYIEGSLRTRQWTDQNGQERYTTEIRGEQMQMLDSPRAENQSNYNQGGYNQNQQGFNQNQGGFGGKNTQGFNQNSKPN
NGQKPPQNQNIPNKNNDLGDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=666107 MN200_RS15030 WP_081313273.1 3069048..3069602(-) (ssb) [Acinetobacter sp. LUNF3]
ATGGATACTGCAACTTATAGTAAAACTAATATGAGCAATGTTATTGTTGTAGGAACACTAGGTAAAGACCCTGAAACAAA
AACCTTTCCAAATGGCGGTTCATTAACTCAGTTTTCAATGGCAACGAGTGAATCGTGGACAGATAAAAGTACGGGTGAAA
AGAAAGAACAAACAGAATGGCACAGAATTGTGCTTAGTAATCGATTAGGTGAAATAGCACAACAATACTTAAGAAAAGGC
TCTAAAGTCTACATTGAAGGTTCATTAAGGACTAGACAGTGGACGGATCAAAATGGTCAGGAAAGATATACCACAGAAAT
TCGTGGCGAGCAGATGCAGATGTTAGATAGTCCAAGAGCGGAAAATCAATCTAATTATAATCAAGGTGGTTATAACCAAA
ATCAACAAGGTTTTAATCAAAATCAAGGCGGTTTTGGTGGTAAAAATACTCAAGGGTTTAATCAGAACAGTAAACCTAAT
AATGGGCAAAAACCACCACAGAATCAAAATATTCCCAATAAAAACAACGATTTAGGAGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(11-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.955

97.283

0.505
  ssb Vibrio cholerae strain A1552

44.751

98.37

0.44