Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   MN200_RS14525 Genome accession   NZ_CP093968
Coordinates   2965148..2965621 (-) Length   157 a.a.
NCBI ID   WP_278189330.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2960148..2970621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS14490 (MN200_14490) - 2960269..2961222 (+) 954 WP_227509235.1 triacylglycerol lipase -
  MN200_RS14495 (MN200_14495) - 2961395..2962366 (+) 972 WP_058870393.1 triacylglycerol lipase -
  MN200_RS14500 (MN200_14500) rplS 2962426..2962800 (-) 375 WP_004691454.1 50S ribosomal protein L19 -
  MN200_RS14505 (MN200_14505) trmD 2962941..2963681 (-) 741 WP_242759728.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MN200_RS14510 (MN200_14510) rimM 2963709..2964257 (-) 549 WP_004978035.1 ribosome maturation factor RimM -
  MN200_RS14515 (MN200_14515) rpsP 2964286..2964543 (-) 258 WP_004718284.1 30S ribosomal protein S16 -
  MN200_RS14520 (MN200_14520) - 2964689..2965147 (-) 459 WP_242759729.1 type IV pilin protein -
  MN200_RS14525 (MN200_14525) comE 2965148..2965621 (-) 474 WP_278189330.1 type IV pilin protein Machinery gene
  MN200_RS14530 (MN200_14530) - 2965636..2969544 (-) 3909 WP_242759730.1 PilC/PilY family type IV pilus protein -
  MN200_RS14535 (MN200_14535) - 2969556..2970278 (-) 723 WP_058870397.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17148.42 Da        Isoelectric Point: 6.9516

>NTDB_id=666100 MN200_RS14525 WP_278189330.1 2965148..2965621(-) (comE) [Acinetobacter sp. LUNF3]
MKKIIKSSGFTLIELMVVVVIVAIFAAIAIPSYQEYVRRAAASQAQQEIQRLATLLDRHKARNFSYRGFTTTSAVLPVGA
TGSAIKYTLTIRDGNDPDLELTDDDAAGRNWAIQAVSSDDKNYTMLLTSTGMRCKNKTTANVDFESCGSTANGSEEW

Nucleotide


Download         Length: 474 bp        

>NTDB_id=666100 MN200_RS14525 WP_278189330.1 2965148..2965621(-) (comE) [Acinetobacter sp. LUNF3]
ATGAAAAAAATAATAAAGTCCTCTGGATTTACATTGATTGAACTAATGGTTGTTGTAGTAATTGTTGCGATTTTCGCAGC
AATTGCTATACCGTCATACCAAGAGTATGTACGACGCGCGGCAGCCAGTCAGGCACAACAAGAGATACAGCGATTAGCTA
CTTTGTTAGATCGGCATAAAGCGCGTAATTTTAGTTATCGAGGATTTACGACTACAAGTGCAGTATTACCTGTGGGAGCA
ACTGGCTCTGCGATTAAATATACATTGACGATCAGAGATGGAAATGATCCAGATTTAGAGTTAACAGATGATGATGCTGC
AGGTCGGAATTGGGCAATTCAAGCTGTGAGTTCGGACGATAAAAATTATACGATGCTACTTACAAGTACAGGGATGCGTT
GTAAGAATAAAACTACAGCAAATGTTGATTTTGAGAGTTGTGGCAGTACCGCGAATGGTAGTGAGGAGTGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

50

100

0.529
  pilY2 Acinetobacter baumannii D1279779

49.677

98.726

0.49