Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MN200_RS14255 Genome accession   NZ_CP093968
Coordinates   2912952..2913599 (+) Length   215 a.a.
NCBI ID   WP_058870363.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2907952..2918599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS14235 (MN200_14235) - 2908275..2909207 (+) 933 WP_114392660.1 IS5 family transposase -
  MN200_RS14240 (MN200_14240) - 2909318..2909842 (-) 525 WP_131772999.1 hypothetical protein -
  MN200_RS14245 (MN200_14245) - 2910071..2910886 (-) 816 WP_058870361.1 NAD-dependent epimerase/dehydratase family protein -
  MN200_RS14250 (MN200_14250) recG 2910920..2912965 (+) 2046 WP_058870362.1 ATP-dependent DNA helicase RecG -
  MN200_RS14255 (MN200_14255) comF 2912952..2913599 (+) 648 WP_058870363.1 phosphoribosyltransferase family protein Machinery gene
  MN200_RS14260 (MN200_14260) - 2913600..2914004 (-) 405 WP_058870364.1 NUDIX domain-containing protein -
  MN200_RS14265 (MN200_14265) - 2914001..2914600 (-) 600 WP_058870365.1 TIGR00730 family Rossman fold protein -
  MN200_RS14270 (MN200_14270) - 2914753..2915766 (+) 1014 WP_058870366.1 CorA family divalent cation transporter -
  MN200_RS14275 (MN200_14275) - 2915849..2916136 (-) 288 WP_004691363.1 STAS domain-containing protein -
  MN200_RS14280 (MN200_14280) - 2916148..2916783 (-) 636 WP_004691364.1 ABC transporter substrate-binding protein -
  MN200_RS14285 (MN200_14285) - 2916804..2917478 (-) 675 WP_010327614.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MN200_RS14290 (MN200_14290) mlaE 2917478..2918257 (-) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24910.14 Da        Isoelectric Point: 9.6092

>NTDB_id=666099 MN200_RS14255 WP_058870363.1 2912952..2913599(+) (comF) [Acinetobacter sp. LUNF3]
MPMFSHLLHTAKQLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTVEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGIIQQIRLPKIQAIVPMPISTQRLAERGYNQSMILAKDLAKQFNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKRYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=666099 MN200_RS14255 WP_058870363.1 2912952..2913599(+) (comF) [Acinetobacter sp. LUNF3]
ATGCCTATGTTTAGTCATTTACTGCACACCGCCAAACAGTTGCTACACAAAGCACAGCCTTGTCAGTTGTGTGGCATTGT
CCGCGCAGATCTGCATTCGGTCTGTCTGGACTGCTGGCAACAACTCCCACTACATCCACAGACCGTTGAAAAACAAGAAC
TGAGTATTCATGTCGCAGGACAGTATCAATATCCTTTAGATCACCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTATTCAGCAAATTCGCTTACCTAAAATACAAGCAATTGTTCCGATGCCGATTTCGAC
TCAGCGTTTAGCAGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTCAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGCAAAACGCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TAAAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.701

90.233

0.512
  comF Acinetobacter baumannii D1279779

56.701

90.233

0.512