Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MO979_RS23865 Genome accession   NZ_CP093965
Coordinates   5169286..5170158 (+) Length   290 a.a.
NCBI ID   WP_023084740.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ATCC BAA-2108     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5164286..5175158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO979_RS29505 - 5164430..5164786 (-) 357 WP_093945208.1 pilin -
  MO979_RS23845 (MO979_23840) - 5164706..5165868 (+) 1163 WP_086937300.1 IS3-like element IS222 family transposase -
  MO979_RS23850 (MO979_23845) - 5165882..5166133 (-) 252 Protein_4725 pilin -
  MO979_RS23855 (MO979_23850) pilB 5166364..5168064 (+) 1701 WP_003107297.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MO979_RS23860 (MO979_23855) pilC 5168068..5169285 (+) 1218 WP_003161763.1 type II secretion system F family protein Machinery gene
  MO979_RS23865 (MO979_23860) pilD 5169286..5170158 (+) 873 WP_023084740.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  MO979_RS23870 (MO979_23865) coaE 5170155..5170766 (+) 612 WP_033982615.1 dephospho-CoA kinase -
  MO979_RS23875 (MO979_23870) yacG 5170763..5170963 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  MO979_RS23880 (MO979_23875) - 5171000..5171209 (-) 210 WP_003094660.1 hypothetical protein -
  MO979_RS23885 (MO979_23880) - 5171315..5172004 (-) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  MO979_RS23890 (MO979_23885) - 5172001..5172471 (-) 471 WP_003094664.1 hypothetical protein -
  MO979_RS23895 (MO979_23890) - 5172468..5172893 (-) 426 WP_003161766.1 GNAT family N-acetyltransferase -
  MO979_RS23900 (MO979_23895) - 5173026..5173655 (+) 630 WP_003094668.1 DUF1780 domain-containing protein -
  MO979_RS23905 (MO979_23900) - 5173652..5174101 (+) 450 WP_003094670.1 MOSC domain-containing protein -
  MO979_RS23910 (MO979_23905) - 5174127..5174297 (+) 171 WP_003094672.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31843.88 Da        Isoelectric Point: 7.7068

>NTDB_id=665987 MO979_RS23865 WP_023084740.1 5169286..5170158(+) (pilD) [Pseudomonas aeruginosa strain ATCC BAA-2108]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=665987 MO979_RS23865 WP_023084740.1 5169286..5170158(+) (pilD) [Pseudomonas aeruginosa strain ATCC BAA-2108]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.714

96.552

0.538
  pilD Vibrio campbellii strain DS40M4

53.004

97.586

0.517
  pilD Acinetobacter nosocomialis M2

50.53

97.586

0.493
  pilD Acinetobacter baumannii D1279779

50.53

97.586

0.493
  pilD Neisseria gonorrhoeae MS11

49.281

95.862

0.472