Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG355_RS05935 Genome accession   NZ_CP108731
Coordinates   1325504..1326139 (+) Length   211 a.a.
NCBI ID   WP_124719416.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00987     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320504..1331139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG355_RS05900 (OG355_05905) - 1320547..1321209 (-) 663 WP_124719138.1 urease accessory protein UreF -
  OG355_RS05905 (OG355_05910) - 1321244..1322965 (-) 1722 WP_124719137.1 urease subunit alpha -
  OG355_RS05910 (OG355_05915) - 1322958..1323269 (-) 312 WP_124719136.1 urease subunit beta -
  OG355_RS05915 (OG355_05920) - 1323285..1323587 (-) 303 WP_124719135.1 urease subunit gamma -
  OG355_RS05920 (OG355_05925) - 1323782..1324402 (-) 621 Protein_1182 TetR/AcrR family transcriptional regulator -
  OG355_RS05925 (OG355_05930) - 1324431..1325041 (+) 611 Protein_1183 ABC transporter permease -
  OG355_RS05930 (OG355_05935) - 1325126..1325410 (-) 285 WP_124719132.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  OG355_RS05935 (OG355_05940) clpP 1325504..1326139 (+) 636 WP_124719416.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG355_RS05940 (OG355_05945) - 1326147..1326455 (+) 309 WP_124719131.1 hypothetical protein -
  OG355_RS05945 (OG355_05950) - 1327033..1327506 (+) 474 WP_124719130.1 C40 family peptidase -
  OG355_RS05950 (OG355_05955) - 1327581..1328213 (-) 633 WP_124719129.1 LysE family translocator -
  OG355_RS05955 (OG355_05960) - 1328286..1329224 (+) 939 WP_124719128.1 LysR family transcriptional regulator -
  OG355_RS05960 (OG355_05965) - 1329234..1329665 (-) 432 WP_124719127.1 ATP-binding protein -
  OG355_RS05965 (OG355_05970) - 1329870..1330730 (+) 861 WP_124719126.1 helix-turn-helix transcriptional regulator -
  OG355_RS05970 (OG355_05975) - 1330755..1330961 (+) 207 WP_124719125.1 DUF397 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22897.86 Da        Isoelectric Point: 4.9255

>NTDB_id=665960 OG355_RS05935 WP_124719416.1 1325504..1326139(+) (clpP) [Streptomyces sp. NBC_00987]
MFRPTARHVLPEFTERTTNGTRTLDPYSKLLSERIVFLGTPVDDTAAGDLIAQLMYLEHDAPDRPVSLYINSPGGSFGAM
SAVYDTMQYLNCEVETYCLGQAGSCASALLAAGAPGRRHALPGARVVVQQPELTEPVQGQPSDLEIEARELERVRAMLTA
LLVRHTGRTEEQITADTERDLILDAAGAKAYGLVDHVLESRNSALPPHGAR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=665960 OG355_RS05935 WP_124719416.1 1325504..1326139(+) (clpP) [Streptomyces sp. NBC_00987]
CTGTTCCGCCCCACCGCCCGTCATGTGCTGCCCGAGTTCACCGAGCGCACGACCAACGGGACCCGCACCCTCGACCCGTA
CTCCAAGCTGCTCTCCGAACGGATCGTCTTCCTCGGCACCCCGGTCGACGACACCGCGGCCGGCGACCTGATCGCGCAGC
TCATGTACCTGGAGCACGACGCACCGGACCGGCCCGTGTCGCTCTACATCAACTCGCCCGGCGGCTCGTTCGGTGCCATG
TCCGCGGTCTACGACACGATGCAGTACCTCAACTGCGAGGTGGAGACCTACTGCCTCGGCCAGGCGGGCTCCTGCGCCTC
CGCACTGCTCGCCGCGGGCGCGCCCGGCCGACGGCACGCGCTGCCCGGCGCGAGAGTCGTCGTACAGCAGCCCGAACTGA
CCGAGCCGGTGCAGGGGCAGCCCTCCGACCTGGAGATCGAGGCGCGGGAACTGGAACGGGTCCGCGCGATGCTCACCGCC
CTGTTGGTCCGTCACACGGGCCGCACCGAGGAGCAGATCACCGCGGACACCGAACGCGACCTCATCCTCGACGCGGCGGG
CGCCAAGGCGTACGGGCTGGTGGACCACGTCCTGGAGAGCCGGAATTCCGCACTGCCGCCGCACGGCGCGAGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

42.408

90.521

0.384
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

41.361

90.521

0.374