Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MPM52_RS08235 Genome accession   NZ_CP093930
Coordinates   1678688..1679374 (-) Length   228 a.a.
NCBI ID   WP_001802022.1    Uniprot ID   A0A7U7EYP5
Organism   Staphylococcus aureus strain WA121-2010_15611     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1673688..1684374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPM52_RS08215 (MPM52_08215) rpsT 1674602..1674853 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  MPM52_RS08220 (MPM52_08220) holA 1674898..1675872 (-) 975 WP_001282563.1 DNA polymerase III subunit delta -
  MPM52_RS08225 (MPM52_08225) comEC 1675929..1678130 (-) 2202 WP_001557362.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MPM52_RS08230 (MPM52_08230) - 1678135..1678596 (-) 462 WP_000439693.1 ComE operon protein 2 -
  MPM52_RS08235 (MPM52_08235) comEA 1678688..1679374 (-) 687 WP_001802022.1 ComEA family DNA-binding protein Machinery gene
  MPM52_RS08240 (MPM52_08240) - 1679414..1680130 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  MPM52_RS08245 (MPM52_08245) rsfS 1680133..1680486 (-) 354 WP_001088020.1 ribosome silencing factor -
  MPM52_RS08250 (MPM52_08250) yqeK 1680487..1681071 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  MPM52_RS08255 (MPM52_08255) nadD 1681061..1681630 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  MPM52_RS08260 (MPM52_08260) yhbY 1681633..1681923 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  MPM52_RS08265 (MPM52_08265) aroE 1681927..1682733 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  MPM52_RS08270 (MPM52_08270) yqeH 1682747..1683847 (-) 1101 WP_001280137.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25900.65 Da        Isoelectric Point: 9.6751

>NTDB_id=665635 MPM52_RS08235 WP_001802022.1 1678688..1679374(-) (comEA) [Staphylococcus aureus strain WA121-2010_15611]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=665635 MPM52_RS08235 WP_001802022.1 1678688..1679374(-) (comEA) [Staphylococcus aureus strain WA121-2010_15611]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

100

1
  comEA Staphylococcus aureus MW2

97.368

100

0.974