Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG509_RS31465 Genome accession   NZ_CP108700
Coordinates   6940832..6940984 (-) Length   50 a.a.
NCBI ID   WP_406186004.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01006     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6935832..6945984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG509_RS31455 (OG509_31375) - 6937803..6939044 (+) 1242 WP_406186002.1 PP2C family protein-serine/threonine phosphatase -
  OG509_RS31460 (OG509_31380) - 6939195..6940661 (+) 1467 WP_406186003.1 APC family permease -
  OG509_RS31465 rcrP 6940832..6940984 (-) 153 WP_406186004.1 ATP-binding cassette domain-containing protein Regulator
  OG509_RS31470 (OG509_31390) - 6941501..6942586 (+) 1086 WP_406186005.1 hypothetical protein -
  OG509_RS31475 (OG509_31395) - 6942660..6944105 (-) 1446 WP_406186006.1 cytochrome P450 -
  OG509_RS31480 (OG509_31400) - 6944102..6944725 (-) 624 WP_406186007.1 GTP-binding protein -
  OG509_RS31485 (OG509_31405) - 6944706..6945020 (-) 315 WP_406186009.1 DUF742 domain-containing protein -
  OG509_RS31490 (OG509_31410) - 6945059..6945448 (-) 390 WP_406186011.1 roadblock/LC7 domain-containing protein -

Sequence

Protein


Download         Length: 50 a.a.        Molecular weight: 5166.89 Da        Isoelectric Point: 8.7188

>NTDB_id=665476 OG509_RS31465 WP_406186004.1 6940832..6940984(-) (rcrP) [Streptomyces sp. NBC_01006]
MVPASQTVAFVGGTDASKSTLVKLIARFYDRAPGAVRVDGADVRALDTTA

Nucleotide


Download         Length: 153 bp        

>NTDB_id=665476 OG509_RS31465 WP_406186004.1 6940832..6940984(-) (rcrP) [Streptomyces sp. NBC_01006]
GTGGTCCCGGCGAGCCAGACCGTAGCCTTCGTTGGCGGGACGGATGCGAGCAAGTCGACGCTCGTGAAGCTGATCGCCCG
GTTCTACGACAGGGCCCCCGGCGCGGTCCGGGTGGACGGTGCGGACGTGCGCGCGCTCGATACGACGGCGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(2-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.659

82

0.44
  comA/nlmT Streptococcus mutans UA159

44.186

86

0.38
  comA Streptococcus pneumoniae Rx1

36.735

98

0.36
  comA Streptococcus pneumoniae D39

36.735

98

0.36
  comA Streptococcus pneumoniae R6

36.735

98

0.36