Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG623_RS19260 Genome accession   NZ_CP108688
Coordinates   4259474..4260886 (-) Length   470 a.a.
NCBI ID   WP_406147978.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4254474..4265886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG623_RS19235 (OG623_19165) - 4254764..4255375 (-) 612 WP_406147971.1 hypothetical protein -
  OG623_RS19240 (OG623_19170) - 4255447..4256031 (-) 585 WP_406147972.1 SigE family RNA polymerase sigma factor -
  OG623_RS19245 (OG623_19175) - 4256214..4257116 (-) 903 WP_406147974.1 A/G-specific adenine glycosylase -
  OG623_RS19250 (OG623_19180) - 4257371..4258216 (+) 846 WP_406147976.1 hypothetical protein -
  OG623_RS19255 (OG623_19185) disA 4258269..4259393 (-) 1125 WP_406147977.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG623_RS19260 (OG623_19190) radA/sms 4259474..4260886 (-) 1413 WP_406147978.1 DNA repair protein RadA Machinery gene
  OG623_RS19265 (OG623_19195) - 4261098..4262909 (+) 1812 WP_406147979.1 BACON domain-containing protein -
  OG623_RS19270 (OG623_19200) - 4263027..4263866 (-) 840 WP_406147981.1 hypothetical protein -
  OG623_RS19275 (OG623_19205) - 4263899..4264846 (+) 948 WP_406147983.1 Ppx/GppA family phosphatase -
  OG623_RS19280 (OG623_19210) - 4264930..4265754 (+) 825 WP_406147985.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49471.61 Da        Isoelectric Point: 8.4864

>NTDB_id=665368 OG623_RS19260 WP_406147978.1 4259474..4260886(-) (radA/sms) [Streptomyces sp. NBC_01012]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSAAAVPIGQVDTRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPELDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFKHALVPRDPGKVPAGMKVTEVADMGDALRALPRRSRPDGPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=665368 OG623_RS19260 WP_406147978.1 4259474..4260886(-) (radA/sms) [Streptomyces sp. NBC_01012]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGCCCGTCCTACCGTTGCACCGAATGCGGCTGGACGACGGCCAAATGGCT
CGGCCGCTGCCCGGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCGGCCGTCCGTACGACGGCGGCGG
GCCGGGTCTCCGCGGCCGCGGTGCCGATCGGCCAGGTCGACACCCGGCAGGCCACCGCCCGCTCGACCGGGGTCGGCGAG
CTGGACCGCGTGCTCGGCGGCGGGCTCGTGCCCGGCGCGGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTCGACGTCGCGGCCAAGGCGGCGTCCGACGACCACCGCACGCTCTATGTCACGGCGGAGGAGTCCGCGAGCC
AGGTGCGGATGCGCGCCGACCGGATCCGCGCGATCAACGACCATCTGTATCTCGCCGCCGAGACCGACCTCTCCGCGGTC
CTGGGACATCTGGACGCGGTCAAGCCGTCCCTCCTCGTCCTCGACTCCGTGCAGACCGTCGCCTCGCCCGAGCTCGACGG
CGCGCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGCGCGCTGATCAGAGCCTCCAAGGAGCGCGGCATGGCGACGC
TGCTGGTGGGCCATGTCACCAAGGACGGCGCCATCGCGGGACCACGCCTCCTGGAACACCTGGTCGATGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCGCGCCTCCGCCTCGTCCGAGGCGTGAAGAACCGGTACGGCGCCACGGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCCTCCGGACTCTTCCTCACCCGCCGTGACGAGCCCGTTC
CCGGCACCTGCCTGACGGTCACCCTGGAGGGCAAGCGCCCGCTCGTCGCCGAGGTGCAGGCGCTGACGGTCGATTCACAG
ATCCCCTCACCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTTCTCGAACAGCGGGG
CCGGATCAGCGCCCTCGGCAAGCGCGACATCTACAGCGCGACGGTGGGCGGCGTGAAGCTCACCGAGCCCGCCGCGGACC
TCGCGATCGCCCTCGCGCTGGCCAGCGCCGCCAGCGACACACCGCTCCCGAAGAACCTCGTCGCGATCGGCGAAGTGGGC
CTCGCCGGGGAGGTCAGAAGGGTGACGGGGGTCCAGCGCAGGCTGGCCGAGGCGTACCGTCTCGGGTTCAAGCACGCCCT
GGTCCCGAGGGACCCGGGAAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTGGCCGACATGGGCGACGCCCTGAGAGCCC
TTCCCCGTCGCTCTCGGCCGGACGGACCACAGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.833

96.596

0.423
  radA Streptococcus pneumoniae Rx1

41.319

96.809

0.4
  radA Streptococcus pneumoniae D39

41.319

96.809

0.4
  radA Streptococcus pneumoniae R6

41.319

96.809

0.4
  radA Streptococcus pneumoniae TIGR4

41.319

96.809

0.4
  radA Streptococcus mitis SK321

42.89

91.277

0.391
  radA Streptococcus mitis NCTC 12261

42.89

91.277

0.391