Detailed information NTG0665313

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MOQ79_RS18875
• Genome accession: NZ_CP093856
• Coordinates: 3907791..3908591 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Bio30
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3902791..3913591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MOQ79_RS18855 (MOQ79_18855)	dksA	3903371..3903826 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
MOQ79_RS18860 (MOQ79_18860)	sfsA	3903989..3904705 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
MOQ79_RS18865 (MOQ79_18865)	thpR	3904705..3905241 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
MOQ79_RS18870 (MOQ79_18870)	hrpB	3905314..3907743 (+)	2430	WP_196530332.1	ATP-dependent helicase HrpB	-
MOQ79_RS18875 (MOQ79_18875)	pilD	3907791..3908591 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
MOQ79_RS18880 (MOQ79_18880)	-	3908588..3909334 (-)	747	WP_023316460.1	type II secretion system protein N	-
MOQ79_RS18885 (MOQ79_18885)	-	3909324..3909809 (-)	486	WP_004145896.1	type II secretion system protein M	-
MOQ79_RS18890 (MOQ79_18890)	gspL	3909802..3910995 (-)	1194	WP_110226596.1	type II secretion system protein GspL	-
MOQ79_RS18895 (MOQ79_18895)	gspK	3910982..3911968 (-)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
MOQ79_RS18900 (MOQ79_18900)	gspJ	3911965..3912561 (-)	597	WP_099451072.1	type II secretion system minor pseudopilin GspJ	-
MOQ79_RS18905 (MOQ79_18905)	gspI	3912558..3912923 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
MOQ79_RS18910 (MOQ79_18910)	gspH	3912926..3913435 (-)	510	WP_021441218.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=665313 MOQ79_RS18875 WP_004145898.1 3907791..3908591(-) (pilD) [Klebsiella pneumoniae strain Bio30]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=665313 MOQ79_RS18875 WP_004145898.1 3907791..3908591(-) (pilD) [Klebsiella pneumoniae strain Bio30]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTCCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425