Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H7R26_RS06420 Genome accession   NZ_AP022173
Coordinates   1322418..1323155 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain WP7-S17-ESBL-01     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1317418..1328155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R26_RS06390 (WP7S17E01_12540) yfiL 1317577..1317942 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  H7R26_RS06395 (WP7S17E01_12550) aroF 1318151..1319221 (+) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  H7R26_RS06400 (WP7S17E01_12560) tyrA 1319232..1320353 (+) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  H7R26_RS06405 (WP7S17E01_12570) pheA 1320396..1321556 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  H7R26_RS06410 pheL 1321655..1321702 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  H7R26_RS06415 (WP7S17E01_12580) raiA 1321806..1322147 (-) 342 WP_000178463.1 ribosome-associated translation inhibitor RaiA -
  H7R26_RS06420 (WP7S17E01_12590) comL 1322418..1323155 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  H7R26_RS06425 (WP7S17E01_12600) rluD 1323290..1324270 (+) 981 WP_000079106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7R26_RS06430 (WP7S17E01_12610) yfiH 1324267..1324998 (+) 732 WP_000040163.1 purine nucleoside phosphorylase YfiH -
  H7R26_RS06435 (WP7S17E01_12620) clpC 1325128..1327701 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=66530 H7R26_RS06420 WP_000197686.1 1322418..1323155(-) (comL) [Escherichia coli strain WP7-S17-ESBL-01]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=66530 H7R26_RS06420 WP_000197686.1 1322418..1323155(-) (comL) [Escherichia coli strain WP7-S17-ESBL-01]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAACCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment