Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG282_RS14005 Genome accession   NZ_CP108685
Coordinates   3299145..3300554 (+) Length   469 a.a.
NCBI ID   WP_250305430.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3294145..3305554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG282_RS13985 (OG282_13920) - 3294543..3295361 (-) 819 WP_250305426.1 sugar phosphate isomerase/epimerase -
  OG282_RS13990 (OG282_13925) - 3295424..3296356 (-) 933 WP_250305427.1 Ppx/GppA phosphatase family protein -
  OG282_RS13995 (OG282_13930) - 3296434..3297240 (+) 807 WP_250305428.1 hypothetical protein -
  OG282_RS14000 (OG282_13935) - 3297280..3298983 (-) 1704 WP_250305429.1 BACON domain-containing protein -
  OG282_RS14005 (OG282_13940) radA/sms 3299145..3300554 (+) 1410 WP_250305430.1 DNA repair protein RadA Machinery gene
  OG282_RS14010 (OG282_13945) disA 3300599..3301723 (+) 1125 WP_250305431.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG282_RS14015 (OG282_13950) - 3301830..3302666 (-) 837 WP_406116428.1 hypothetical protein -
  OG282_RS14020 (OG282_13955) - 3302850..3303458 (+) 609 WP_250305433.1 phosphatase PAP2 family protein -
  OG282_RS14025 (OG282_13960) - 3303475..3304392 (+) 918 WP_406114145.1 A/G-specific adenine glycosylase -
  OG282_RS14030 (OG282_13965) - 3304563..3305114 (+) 552 WP_250305435.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49394.64 Da        Isoelectric Point: 8.0122

>NTDB_id=665212 OG282_RS14005 WP_250305430.1 3299145..3300554(+) (radA/sms) [Streptomyces sp. NBC_01014]
MATRAKTKDRPSYRCTECGWTTAKWLGRCPECQTWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRTATARSTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIHAINDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPELDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDTQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVIEVADMGDALRVLPRSPRARAPQEEVVRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=665212 OG282_RS14005 WP_250305430.1 3299145..3300554(+) (radA/sms) [Streptomyces sp. NBC_01014]
ATGGCCACCCGTGCAAAGACCAAAGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCTCGG
CCGCTGCCCCGAGTGCCAGACCTGGGGGACGGTCGAGGAGTTCGGCGGCGCGCCCGCCGTGCGTACGACGGCGGCGGGCC
GGGTCAGCACCGCCGCGGTCCCCATCGGCCAGGTCGACAGCCGGACGGCGACCGCCCGTTCCACCGGTGTCGCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGCGCCGTGGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
GCTGCTCGATGTCGCGGCGAAGGCGGCCAGTGACGACCACCGCACGCTCTACGTGACCGCCGAGGAGTCCGCCAGCCAGG
TCAGGCTGCGCGCCGACCGGATCCACGCGATCAACGACCATCTGTACCTGGCCGCCGAGACCGATCTCTCCGCGGTGCTC
GGCCACCTCGATGCCGTCAAGCCGTCCCTGCTGGTGCTGGACTCCGTACAGACGGTGGCCTCGCCCGAGCTGGACGGGGC
GCCCGGCGGAATGGCGCAGGTGCGTGAGGTGGCGGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCACGCTGC
TGGTCGGCCACGTGACGAAGGACGGCGCCATCGCGGGCCCGCGGCTCCTGGAACACCTGGTGGACGTCGTGCTCTCCTTC
GAGGGCGACCGGCACGCCCGCCTCCGGCTGGTCCGCGGTGTCAAGAACCGGTACGGCGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCGAGCGGGCTGTTCCTGACACGCCGTGACGAGCCCGTCCCCG
GCACCTGCCTGACGGTCACCCTGGAGGGCAAGCGCCCCCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACACCCAGATC
CCTTCACCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTCGAACAGCGCGGCAG
GATCAGCGCGCTCGGCAAGCGCGACATCTACACGGCGACGGTCGGCGGCGTGAAGCTCACCGAACCGGCCGCCGACCTGG
CCGTCGCACTGGCCCTGGCCTCCGCGGCCAGCGATGTCCCGCTGCCGAAGAACCTGGTCGCGATCGGCGAAGTCGGCCTG
GCAGGCGAGGTCCGAAGGGTCACCGGCGTCCAGCGCAGGCTCGCCGAGGCGCACCGTCTCGGCTTCACCCATGCCCTGGT
CCCGGCCGACCCGGGGAAGGTCCCGGCGGGCATGAAGGTGATCGAAGTGGCCGACATGGGAGACGCGCTCCGGGTCCTCC
CGCGCAGTCCGAGGGCCCGCGCGCCCCAGGAGGAGGTAGTGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(81-222)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.736

97.015

0.424
  radA Streptococcus mitis SK321

42.637

97.015

0.414
  radA Streptococcus mitis NCTC 12261

42.637

97.015

0.414
  radA Streptococcus pneumoniae TIGR4

42.699

96.375

0.412
  radA Streptococcus pneumoniae R6

42.699

96.375

0.412
  radA Streptococcus pneumoniae Rx1

42.699

96.375

0.412
  radA Streptococcus pneumoniae D39

42.699

96.375

0.412