Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MOW04_RS18160 Genome accession   NZ_CP093546
Coordinates   3515241..3515930 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. K1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3510241..3520930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW04_RS18125 flgN 3510421..3510903 (-) 483 WP_003227999.1 flagellar protein FlgN -
  MOW04_RS18130 flgM 3510919..3511185 (-) 267 WP_128738293.1 flagellar biosynthesis anti-sigma factor FlgM -
  MOW04_RS18135 - 3511266..3511685 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MOW04_RS18140 comFC 3511759..3512481 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  MOW04_RS18145 comFB 3512445..3512741 (-) 297 WP_003227989.1 late competence protein ComFB -
  MOW04_RS18150 comFA 3512801..3514192 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  MOW04_RS18155 - 3514298..3515143 (-) 846 WP_128738295.1 DegV family protein -
  MOW04_RS18160 degU 3515241..3515930 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MOW04_RS18165 degS 3516013..3517170 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MOW04_RS18170 - 3517387..3518040 (+) 654 WP_003227979.1 YigZ family protein -
  MOW04_RS18175 tagV 3518040..3519215 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  MOW04_RS18180 - 3519288..3520364 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=665175 MOW04_RS18160 WP_003219701.1 3515241..3515930(-) (degU) [Bacillus sp. K1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=665175 MOW04_RS18160 WP_003219701.1 3515241..3515930(-) (degU) [Bacillus sp. K1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1