Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OG331_RS22330 Genome accession   NZ_CP108683
Coordinates   4930240..4931649 (+) Length   469 a.a.
NCBI ID   WP_406198927.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4925240..4936649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG331_RS22315 (OG331_22140) - 4926346..4927278 (-) 933 WP_406198921.1 Ppx/GppA family phosphatase -
  OG331_RS22320 (OG331_22145) - 4927353..4928219 (+) 867 WP_406198923.1 hypothetical protein -
  OG331_RS22325 (OG331_22150) - 4928242..4930029 (-) 1788 WP_406198925.1 BACON domain-containing protein -
  OG331_RS22330 (OG331_22155) radA 4930240..4931649 (+) 1410 WP_406198927.1 DNA repair protein RadA Machinery gene
  OG331_RS22335 (OG331_22160) disA 4931731..4932855 (+) 1125 WP_328425026.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG331_RS22340 (OG331_22165) - 4933068..4933877 (-) 810 WP_406198929.1 hypothetical protein -
  OG331_RS22345 (OG331_22170) - 4934063..4934695 (+) 633 WP_406198931.1 phosphatase PAP2 family protein -
  OG331_RS22350 (OG331_22175) - 4934699..4935358 (-) 660 WP_406198933.1 response regulator -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49614.69 Da        Isoelectric Point: 7.7222

>NTDB_id=665128 OG331_RS22330 WP_406198927.1 4930240..4931649(+) (radA) [Streptomyces sp. NBC_01017]
MAARTKSTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSALPIGQVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPAGMKVLEVADIGDALRVLPRSRRREAPRDDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=665128 OG331_RS22330 WP_406198927.1 4930240..4931649(+) (radA) [Streptomyces sp. NBC_01017]
ATGGCTGCCCGTACCAAGTCCACGAAGGACCGCCCGTCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGCACGACGACGCCGGGGC
GGGTGACGACGTCCGCGCTGCCGATCGGGCAGGTCGACGGACGGCAGGCCACCGCGCGGCCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGGGGCGGGCTGGTGCCCGGCGCCGTCGTCCTCGTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
GCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACCCTGTATGTCACCGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGTGCCGACCGCATCGGCGCCATCGACGACCACCTGTATCTCGCGGCCGAGACCGATCTGGCCGCCGTGCTG
GGCCACTTGGACGCGGTGAAGCCGTCGCTGCTCATCATGGACTCGGTGCAGACCGTGGCCTCCCCGGAGATCGACGGTGC
GCCCGGCGGCATGGCACAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGGGCCTCCAAGGATCGCGGGATGTCCACGCTCC
TTGTGGGACACGTCACCAAGGACGGCGCAATCGCCGGACCCCGCCTCCTCGAACACCTCGTGGACGTGGTGCTCAGCTTC
GAGGGCGACCGGCACGCGCGCCTGCGTCTCGTACGAGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAACTGCACGATGAGGGCATCACGGGCCTCGCCGACCCAAGCGGACTTTTCCTGACCCGTCGTGCCGAACCGGTCCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAAGTCCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCGCCCCGCCGTACGACGTCCGGCCTGGAGACGTCCCGCGTCTCGATGATGCTGGCCGTCCTCGAACAGCGCGGCCG
GATCAGCGCCCTCGGCAAGCGGGACATCTATTCCGCGACCGTGGGCGGCGTGAAGCTCTCGGAGCCCGCCGCCGACCTCG
CCGTGGCCCTCGCCCTGGCCTCCGCCGCGAGTGACACACCTCTCCCCAAGAACCTCGTCGCGATCGGCGAGGTGGGCCTG
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCAGACTCGCCGAAGCGCACCGACTGGGCTTCACACACGCCCTCGT
ACCGGGCGACCCGGGCAAGATCCCTGCGGGCATGAAGGTGCTGGAAGTGGCCGACATAGGGGACGCGCTGCGGGTCCTTC
CACGCTCGCGTCGCAGAGAGGCCCCACGGGACGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.142

96.375

0.416
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

96.375

0.416
  radA Streptococcus mitis NCTC 12261

43.142

96.375

0.416
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414