Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MOV58_RS03890 Genome accession   NZ_CP093539
Coordinates   798923..799318 (+) Length   131 a.a.
NCBI ID   WP_049437359.1    Uniprot ID   -
Organism   Staphylococcus hominis strain C5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 793923..804318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOV58_RS03860 (MOV58_03860) atpD 794028..795440 (+) 1413 WP_002448706.1 F0F1 ATP synthase subunit beta -
  MOV58_RS03865 (MOV58_03865) - 795462..795863 (+) 402 WP_002448708.1 F0F1 ATP synthase subunit epsilon -
  MOV58_RS03870 (MOV58_03870) - 796172..796402 (+) 231 WP_002448711.1 DUF1146 family protein -
  MOV58_RS03875 (MOV58_03875) murA 796509..797774 (+) 1266 WP_002448704.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MOV58_RS03880 (MOV58_03880) fabZ 797802..798239 (+) 438 WP_002448673.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MOV58_RS03885 (MOV58_03885) - 798289..798729 (-) 441 WP_002448687.1 YwpF-like family protein -
  MOV58_RS03890 (MOV58_03890) ssb 798923..799318 (+) 396 WP_049437359.1 single-stranded DNA-binding protein Machinery gene
  MOV58_RS03895 (MOV58_03895) - 799712..800503 (+) 792 WP_002488136.1 transglycosylase family protein -
  MOV58_RS03900 (MOV58_03900) tenA 800895..801584 (+) 690 WP_077700806.1 thiaminase II -
  MOV58_RS03905 (MOV58_03905) thiD 801577..802398 (+) 822 WP_002455065.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MOV58_RS03910 (MOV58_03910) thiM 802391..803179 (+) 789 WP_002448660.1 hydroxyethylthiazole kinase -
  MOV58_RS03915 (MOV58_03915) thiE 803182..803820 (+) 639 WP_002448695.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15113.28 Da        Isoelectric Point: 6.9535

>NTDB_id=665080 MOV58_RS03890 WP_049437359.1 798923..799318(+) (ssb) [Staphylococcus hominis strain C5]
MLNKIVIVGRMTKDAKIYNNEEVKIATFSVATERNYKDENDEIACDYILCKAFGKMASNIEKYTSQGSLVGITGQMRSRK
YEKEKQTHFVTELYVETIKFMSPKLNNEKLSDSSLNTDTYPFDNLELMNIK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=665080 MOV58_RS03890 WP_049437359.1 798923..799318(+) (ssb) [Staphylococcus hominis strain C5]
ATGTTAAATAAGATAGTAATCGTTGGTCGTATGACTAAAGATGCAAAAATTTATAATAATGAGGAGGTGAAAATCGCAAC
GTTTAGTGTGGCTACTGAACGTAATTATAAAGATGAAAATGATGAAATAGCGTGTGACTATATATTGTGTAAAGCATTTG
GTAAGATGGCCAGTAACATTGAAAAATATACTTCTCAAGGATCATTAGTAGGTATTACTGGCCAAATGCGTTCTCGTAAA
TATGAAAAGGAAAAACAAACTCACTTTGTAACAGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATTAAATAA
TGAAAAACTCTCAGATAGCTCACTAAATACAGACACTTATCCATTTGATAATCTCGAATTAATGAATATAAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.809

100

0.748
  ssb Staphylococcus aureus MW2

74.046

100

0.74