Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MPF55_RS05215 Genome accession   NZ_CP093527
Coordinates   1046653..1047339 (+) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 697R     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1041653..1052339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF55_RS05180 (MPF55_05180) yqeH 1042180..1043280 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  MPF55_RS05185 (MPF55_05185) aroE 1043294..1044100 (+) 807 WP_000666767.1 shikimate dehydrogenase -
  MPF55_RS05190 (MPF55_05190) yhbY 1044104..1044394 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  MPF55_RS05195 (MPF55_05195) nadD 1044397..1044966 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  MPF55_RS05200 (MPF55_05200) yqeK 1044956..1045540 (+) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  MPF55_RS05205 (MPF55_05205) rsfS 1045541..1045894 (+) 354 WP_001088020.1 ribosome silencing factor -
  MPF55_RS05210 (MPF55_05210) - 1045897..1046613 (+) 717 WP_000942456.1 class I SAM-dependent methyltransferase -
  MPF55_RS05215 (MPF55_05215) comEA 1046653..1047339 (+) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  MPF55_RS05220 (MPF55_05220) - 1047431..1047892 (+) 462 WP_000439693.1 ComE operon protein 2 -
  MPF55_RS05225 (MPF55_05225) comEC 1047897..1050098 (+) 2202 WP_000967504.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MPF55_RS05230 (MPF55_05230) holA 1050155..1051129 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  MPF55_RS05235 (MPF55_05235) rpsT 1051174..1051425 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=665017 MPF55_RS05215 WP_078055782.1 1046653..1047339(+) (comEA) [Staphylococcus aureus strain 697R]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=665017 MPF55_RS05215 WP_078055782.1 1046653..1047339(+) (comEA) [Staphylococcus aureus strain 697R]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982