Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG393_RS16915 Genome accession   NZ_CP108677
Coordinates   3832325..3832924 (+) Length   199 a.a.
NCBI ID   WP_327375482.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01216     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3827325..3837924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG393_RS16890 (OG393_16920) - 3827758..3829119 (+) 1362 WP_327375481.1 aspartate aminotransferase family protein -
  OG393_RS16895 (OG393_16925) - 3829288..3829983 (+) 696 WP_327378456.1 GntR family transcriptional regulator -
  OG393_RS16900 (OG393_16930) - 3830226..3830876 (+) 651 WP_327378457.1 hypothetical protein -
  OG393_RS16905 (OG393_16935) - 3830928..3831635 (-) 708 WP_327378458.1 SLATT domain-containing protein -
  OG393_RS16910 (OG393_16940) - 3831905..3832240 (+) 336 WP_327378459.1 YbaB/EbfC family nucleoid-associated protein -
  OG393_RS16915 (OG393_16945) recR 3832325..3832924 (+) 600 WP_327375482.1 recombination mediator RecR Machinery gene
  OG393_RS16920 (OG393_16950) - 3832983..3833645 (+) 663 WP_327375483.1 DUF5063 domain-containing protein -
  OG393_RS16925 (OG393_16955) - 3833810..3835081 (+) 1272 WP_327375484.1 aspartate kinase -
  OG393_RS16930 (OG393_16960) - 3835078..3836166 (+) 1089 WP_327375485.1 aspartate-semialdehyde dehydrogenase -
  OG393_RS16935 (OG393_16965) - 3836579..3837166 (+) 588 WP_327378460.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21868.20 Da        Isoelectric Point: 5.1616

>NTDB_id=664989 OG393_RS16915 WP_327375482.1 3832325..3832924(+) (recR) [Streptomyces sp. NBC_01216]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKEKVRFCAVCGNVAQQEQCNICRDPRRDQSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=664989 OG393_RS16915 WP_327375482.1 3832325..3832924(+) (recR) [Streptomyces sp. NBC_01216]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGAGTCGGTCCCAAGAGCGCCCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCCACCGACGTACGCCGTCTCGCGCACGCGCTCCTCGAGGTCAAGGAGAAGGTCA
GGTTCTGCGCGGTCTGCGGCAACGTGGCACAGCAGGAGCAGTGCAACATCTGCCGCGACCCGCGCCGCGACCAGTCGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGCGGGCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGGGTCGGCCCGGACGATCTGCGCATCCGCGAACTGCTGGCGCGGCTCGCGGACGGTG
CGGTCACCGAGCTGATCCTGGCGACCGATCCGAACCTGGAGGGCGAGGCCACCGCGACCTATCTGGCGCGGATGATCAAG
CCCATGGGGCTGAAGGTCACCCGGCTCGCGAGCGGTCTGCCGGTGGGCGGCGATCTCGAATACGCCGACGAGGTGACGCT
GGGGCGTGCCTTCGAGGGGCGGCGCCTGCTAGATGTATGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.155

97.487

0.538
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467