Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG316_RS20735 Genome accession   NZ_CP108674
Coordinates   4711736..4713148 (+) Length   470 a.a.
NCBI ID   WP_326736925.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4706736..4718148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG316_RS20715 (OG316_20780) - 4706766..4707590 (-) 825 WP_326736921.1 sugar phosphate isomerase/epimerase -
  OG316_RS20720 (OG316_20785) - 4707682..4708632 (-) 951 WP_326736922.1 Ppx/GppA phosphatase family protein -
  OG316_RS20725 (OG316_20790) - 4708717..4709565 (+) 849 WP_326736923.1 hypothetical protein -
  OG316_RS20730 (OG316_20795) - 4709580..4711550 (-) 1971 WP_326736924.1 hypothetical protein -
  OG316_RS20735 (OG316_20800) radA/sms 4711736..4713148 (+) 1413 WP_326736925.1 DNA repair protein RadA Machinery gene
  OG316_RS20740 (OG316_20805) disA 4713272..4714396 (+) 1125 WP_326736926.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG316_RS20745 (OG316_20810) - 4714473..4715270 (-) 798 WP_326740657.1 hypothetical protein -
  OG316_RS20750 (OG316_20815) - 4715648..4716550 (+) 903 WP_326736927.1 A/G-specific adenine glycosylase -
  OG316_RS20755 (OG316_20820) - 4716770..4717414 (+) 645 WP_326736928.1 SigE family RNA polymerase sigma factor -
  OG316_RS20760 (OG316_20825) - 4717402..4718145 (+) 744 WP_326736929.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49503.65 Da        Isoelectric Point: 8.4942

>NTDB_id=664911 OG316_RS20735 WP_326736925.1 4711736..4713148(+) (radA/sms) [Streptomyces sp. NBC_01022]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCFECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGKISSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRAQAPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=664911 OG316_RS20735 WP_326736925.1 4711736..4713148(+) (radA/sms) [Streptomyces sp. NBC_01022]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCTTCGAGTGCCAGGCGTGGGGAACGGTCGAGGAGTTCGGCGGCGCCCCTGCGGTCCGGACCACGGCGGCAG
GCCGGGTCTCCACCGCCGCGCTCCCCATCGGACAGGTCGACAGCCGCCAGGCCACCGCCCGCTCGACGGGCGTCGGCGAG
CTGGACCGGGTGCTGGGCGGCGGGCTGGTGCCGGGCGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGGAAGTCGAC
GCTGCTGCTGGATGTGGCGGCCAAGGCGGCGAGCGAGGAGCACCGCACGCTCTACGTCACCGCCGAGGAGTCCGCCAGCC
AGGTCCGCATGCGTGCCGACCGGATCCGGGCGATCAACGACCATCTGTACCTGGCCGCCGAGACCGACCTGTCCGCGGTC
CTGGGCCATCTGGACGCCGTCAAGCCGTCCCTGCTCGTCCTGGACTCCGTACAGACCGTCGCCTCACCCGAGATCGAGGG
CGCGCCCGGCGGCATGGCACAGGTCCGCGAGGTCGCCGGAGCACTGATCCGCGCCTCCAAGGAGCGCGGCATGTCGACCC
TGCTGGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGCCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCATGCCCGGCTGCGGCTCGTGCGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTCCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGCCTCTTCCTCACCCGCCGGGACGAGCCCGTGC
CCGGCACCTGCCTGACCGTCACCCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGATTCCCAG
ATCCCCTCGCCCCGGCGCACCACCTCGGGTCTTGAGACGTCCCGGGTGTCGATGATGCTGGCCGTCCTGGAGCAGCGCGG
CAAGATCAGCTCGCTCGGCAAGCGGGACATCTACAGCGCCACGGTCGGCGGTGTGAAGCTCTCCGAGCCGGCCGCGGATC
TCGCGATCGCGCTCGCCCTGGCCAGCGCGGCAAGCGACACACCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGT
CTCGCGGGCGAGGTCAGACGGGTCACCGGGGTCCAGCGCAGACTGGCCGAGGCACACCGCCTGGGCTTCACCCACGCGCT
GGTTCCGACCGATCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTCGCCAACATGGGCGACGCTCTGAGAGTGC
TCCCGCGCCGCTCTCGCGCACAGGCCCCACAGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(85-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.383

0.421
  radA Streptococcus pneumoniae Rx1

41.943

96.383

0.404
  radA Streptococcus pneumoniae D39

41.943

96.383

0.404
  radA Streptococcus pneumoniae R6

41.943

96.383

0.404
  radA Streptococcus pneumoniae TIGR4

41.943

96.383

0.404
  radA Streptococcus mitis SK321

43.357

91.277

0.396
  radA Streptococcus mitis NCTC 12261

43.357

91.277

0.396