Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG217_RS16360 Genome accession   NZ_CP108671
Coordinates   3657522..3658919 (+) Length   465 a.a.
NCBI ID   WP_406154080.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3652522..3663919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG217_RS16340 (OG217_16350) - 3652837..3653655 (-) 819 WP_328329776.1 sugar phosphate isomerase/epimerase -
  OG217_RS16345 (OG217_16355) - 3653723..3654655 (-) 933 WP_371536244.1 Ppx/GppA family phosphatase -
  OG217_RS16350 (OG217_16360) - 3654733..3655563 (+) 831 WP_328329771.1 hypothetical protein -
  OG217_RS16355 (OG217_16365) - 3655627..3657339 (-) 1713 WP_406154078.1 BACON domain-containing protein -
  OG217_RS16360 (OG217_16370) radA/sms 3657522..3658919 (+) 1398 WP_406154080.1 DNA repair protein RadA Machinery gene
  OG217_RS16365 (OG217_16375) disA 3658976..3660100 (+) 1125 WP_328329764.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG217_RS16370 (OG217_16380) - 3660204..3661061 (-) 858 WP_406154081.1 hypothetical protein -
  OG217_RS16375 (OG217_16385) - 3661236..3661844 (+) 609 WP_328329762.1 phosphatase PAP2 family protein -
  OG217_RS16380 (OG217_16390) - 3661861..3662889 (+) 1029 WP_406154083.1 A/G-specific adenine glycosylase -
  OG217_RS16385 (OG217_16395) - 3663065..3663616 (+) 552 WP_266854649.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 48797.86 Da        Isoelectric Point: 7.7378

>NTDB_id=664838 OG217_RS16360 WP_406154080.1 3657522..3658919(+) (radA/sms) [Streptomyces sp. NBC_01023]
MATRAKTRERPSYRCTECGYTTAKWLGRCPECQTWGTVEEQGGGPAVRTTAAGPVSSAAVPIGQVDSRTATARSTGVTEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGSDHRTLYVTAEESASQVRLRADRIHAINEHLYLAAETDLAAVL
GHLDAVKPSLLVLDSVQTVASPELDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYTATVGGVKLTEPAADLAVALALASAASDIPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVIEVADMGDALRALPRRSRARAPQDE

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=664838 OG217_RS16360 WP_406154080.1 3657522..3658919(+) (radA/sms) [Streptomyces sp. NBC_01023]
ATGGCCACCCGTGCGAAGACCAGAGAACGGCCGTCCTACCGCTGCACCGAATGCGGGTACACGACGGCCAAGTGGCTGGG
CCGCTGCCCCGAGTGCCAGACGTGGGGGACGGTCGAGGAGCAGGGCGGCGGGCCCGCCGTGCGGACGACCGCGGCCGGTC
CGGTCAGCAGCGCCGCCGTCCCCATCGGCCAGGTCGACAGCCGGACGGCGACAGCGCGTTCGACTGGGGTCACCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTCGTGCCGGGCGCCGTGGTGCTGCTCGCCGGTGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGATGTCGCGGCGAAGGCGGCGGGCTCCGACCACCGCACGCTCTATGTGACGGCCGAGGAGTCCGCGAGCCAGG
TCAGGCTGCGCGCCGACCGGATCCACGCGATCAACGAACACCTGTATCTGGCCGCCGAGACGGATCTCGCAGCGGTGCTC
GGCCACCTCGACGCGGTGAAGCCGTCCCTGCTGGTCCTGGACTCCGTGCAGACGGTGGCCTCACCCGAACTGGACGGTGC
GCCGGGCGGCATGGCGCAGGTGCGCGAGGTCGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGGCCACGCTGC
TCGTCGGGCACGTCACGAAGGACGGCGCCATCGCCGGGCCCCGGCTTCTTGAGCACCTGGTGGACGTCGTGCTGTCCTTC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCGTCAAGAACAGATACGGGGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACGCGCCGTGACGAACCGGTGCCCG
GGACCTGTCTGACGGTCACCCTGGAGGGCAAGCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCACCCCGGCGCACCACCTCCGGCCTGGAGACCTCCCGGGTGTCGATGATGCTCGCCGTCCTCGAACAGCGCGGCAG
GATCAGCGCGCTCGGCAAGCGCGACATCTACACGGCGACGGTCGGCGGCGTGAAGCTCACCGAACCGGCCGCCGACCTGG
CCGTCGCGCTCGCCCTGGCCTCCGCCGCCAGCGACATCCCGCTCCCGAAGAACCTGGTGGCGATCGGCGAAGTGGGTCTC
GCGGGCGAGGTCAGAAGAGTCACCGGCGTCCAGCGCAGGCTCGCCGAGGCACACCGTCTCGGCTTCACCCACGCCCTCGT
ACCGACCGACCCGGGGAAGGTCCCCGCAGGGATGAAGGTCATCGAAGTGGCGGACATGGGAGACGCGCTGCGGGCCCTTC
CGCGCCGTTCAAGGGCCCGCGCGCCCCAGGACGAGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(80-222)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.077

97.849

0.422
  radA Streptococcus mitis SK321

41.85

97.634

0.409
  radA Streptococcus mitis NCTC 12261

41.85

97.634

0.409
  radA Streptococcus pneumoniae TIGR4

41.907

96.989

0.406
  radA Streptococcus pneumoniae R6

41.907

96.989

0.406
  radA Streptococcus pneumoniae Rx1

41.907

96.989

0.406
  radA Streptococcus pneumoniae D39

41.907

96.989

0.406