Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG462_RS20120 Genome accession   NZ_CP108669
Coordinates   4513620..4515023 (+) Length   467 a.a.
NCBI ID   WP_406059418.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4508620..4520023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG462_RS20100 (OG462_20080) - 4508685..4509521 (-) 837 WP_406059410.1 sugar phosphate isomerase/epimerase family protein -
  OG462_RS20105 (OG462_20085) - 4509752..4510684 (-) 933 WP_406059412.1 Ppx/GppA family phosphatase -
  OG462_RS20110 (OG462_20090) - 4510726..4511553 (+) 828 WP_406059414.1 hypothetical protein -
  OG462_RS20115 (OG462_20095) - 4511668..4513458 (-) 1791 WP_406059416.1 BACON domain-containing protein -
  OG462_RS20120 (OG462_20100) radA/sms 4513620..4515023 (+) 1404 WP_406059418.1 DNA repair protein RadA Machinery gene
  OG462_RS20125 (OG462_20105) disA 4515428..4516552 (+) 1125 WP_056569600.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG462_RS20130 (OG462_20110) - 4516711..4517565 (-) 855 WP_406059420.1 hypothetical protein -
  OG462_RS20135 (OG462_20115) - 4517814..4518485 (+) 672 WP_406059422.1 phosphatase PAP2 family protein -
  OG462_RS20140 (OG462_20120) - 4518519..4519523 (+) 1005 WP_406059424.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 49115.18 Da        Isoelectric Point: 8.0021

>NTDB_id=664746 OG462_RS20120 WP_406059418.1 4513620..4515023(+) (radA/sms) [Streptomyces sp. NBC_01077]
MAARTKSTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAAVPIGQVDGRQATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGRRPLVAEVQSLTVDSQI
PSPRRTVSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVRLTEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVTEVADMGDALRVLPRSRRAKAPEGAEK

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=664746 OG462_RS20120 WP_406059418.1 4513620..4515023(+) (radA/sms) [Streptomyces sp. NBC_01077]
ATGGCTGCCCGTACGAAATCGACCAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACCGTCGAGGAGTACGGCGCGCCCGCCGTCCGTACGACCGCGGCGGGCC
GGGTCTCCACCGCCGCCGTCCCCATCGGGCAGGTCGACGGCCGGCAGGCGACCGCCCGCTCCACCGGCGTCGACGAGCTG
GACAGGGTCCTCGGCGGGGGCCTGGTGCCCGGCGCCGTCGTCCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
CCTGCTCGACGTGGCGGCCAAGGCGGCCAGCGACGAGCACCGCACGCTGTACGTCACGGGTGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGGATCAACGCGCTCAGCGACCATCTGTACCTGGCGGCCGAGACCGACCTGTCGGCCGTCCTC
GGGCACCTCGACGCCGTGAAGCCCTCGCTGCTGATCATGGACTCGGTGCAGACCGTCGCCTCTCCCGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCGCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TCGTCGGCCACGTCACCAAGGACGGGGCCATCGCGGGCCCCCGGCTCCTGGAGCACCTGGTCGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTCCGGCTGGTCCGGGGGGTGAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGTCTGGCCGACCCCTCCGGGCTCTTCCTGACCCGGCGTGACGTGGCCGTGCCGG
GCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTCGTCGCCGAGGTCCAGTCGCTGACGGTGGACTCCCAGATC
CCCTCCCCGCGCCGGACCGTCTCCGGTCTGGAGACCTCCCGTGTCTCGATGATGCTGGCGGTCCTGGAGCAGCGAGGGCG
GATCAGCGCGCTGGGCAAGCGGGACATCTACAGCGCGACCGTGGGCGGCGTGCGGCTCACCGAGCCCGCAGCCGACCTGG
CGATCGCGCTCGCCCTCGCCTCCGCCGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTCGGCCTC
GCGGGCGAGGTCCGCCGGGTGACCGGCGTCCAGCGCCGGCTGGCCGAGGCGCACCGGCTGGGCTTCACGCACGCGCTGGT
CCCCTCGGACCCGGGCAAGGTGCCGGCCGGCATGAAGGTGACGGAGGTCGCGGACATGGGCGACGCGCTGCGGGTGCTGC
CGCGCAGCCGGCGCGCGAAGGCTCCGGAGGGGGCGGAGAAGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(82-222)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.363

96.788

0.42
  radA Streptococcus mitis SK321

43.326

91.435

0.396
  radA Streptococcus pneumoniae Rx1

43.326

91.435

0.396
  radA Streptococcus pneumoniae D39

43.326

91.435

0.396
  radA Streptococcus pneumoniae R6

43.326

91.435

0.396
  radA Streptococcus pneumoniae TIGR4

43.326

91.435

0.396
  radA Streptococcus mitis NCTC 12261

43.326

91.435

0.396