Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG510_RS17030 Genome accession   NZ_CP108660
Coordinates   3861297..3861896 (-) Length   199 a.a.
NCBI ID   WP_385022688.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3856297..3866896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG510_RS17015 (OG510_16975) - 3857514..3858641 (-) 1128 WP_406137798.1 DUF1996 domain-containing protein -
  OG510_RS17020 (OG510_16980) - 3859047..3860567 (+) 1521 WP_406137799.1 MFS transporter -
  OG510_RS17025 (OG510_16985) - 3860648..3861304 (-) 657 WP_406137800.1 DUF5063 domain-containing protein -
  OG510_RS17030 (OG510_16990) recR 3861297..3861896 (-) 600 WP_385022688.1 recombination mediator RecR Machinery gene
  OG510_RS17035 (OG510_16995) - 3861999..3862334 (-) 336 WP_406137802.1 YbaB/EbfC family nucleoid-associated protein -
  OG510_RS17040 (OG510_17000) - 3862593..3863543 (+) 951 WP_406137803.1 SLATT domain-containing protein -
  OG510_RS17045 (OG510_17005) - 3863592..3864737 (-) 1146 WP_406137804.1 NAD-dependent epimerase/dehydratase family protein -
  OG510_RS17050 (OG510_17010) - 3864834..3865484 (-) 651 WP_406137805.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21717.03 Da        Isoelectric Point: 4.9804

>NTDB_id=664677 OG510_RS17030 WP_385022688.1 3861297..3861896(-) (recR) [Streptomyces sp. NBC_01089]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHSLLEVKDKVRFCAVCGNVAQAELCGICQDTRRDQTV
ICVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=664677 OG510_RS17030 WP_385022688.1 3861297..3861896(-) (recR) [Streptomyces sp. NBC_01089]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCCACCGATGTGCGCCGCCTGGCGCACTCGCTGCTCGAAGTGAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGCAATGTCGCGCAGGCCGAGCTGTGCGGGATCTGCCAGGACACCCGTCGCGATCAGACGGTG
ATCTGTGTCGTCGAGGAGCCGAAGGACGTCGTGGCGGTCGAGCGGACCCGTGAGTTCCGCGGCCGCTACCACGTGCTCGG
CGGCGCCATCAGCCCCATCGAAGGCGTCGGCCCCGACGATCTGCGGATCAGGGAACTGCTGGCCAGGCTCGCGGACGGCG
CTGTCACCGAGCTGATCCTGGCGACCGACCCGAACCTGGAGGGCGAGGCCACGGCGACGTACCTCGCCCGCATGATCAAA
CCCATGGGTTTGAAGGTCACACGGCTGGCGAGTGGTCTTCCTGTAGGGGGAGACCTGGAATACGCGGACGAGGTCACGCT
CGGTCGTGCCTTTGAGGGGAGACGACTACTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467