Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   MOQ58_RS25340 Genome accession   NZ_CP093428
Coordinates   5554949..5556538 (+) Length   529 a.a.
NCBI ID   WP_280162243.1    Uniprot ID   -
Organism   Pseudomonas migulae strain 8R6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5549949..5561538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOQ58_RS25320 (MOQ58_25280) pgeF 5551732..5552457 (-) 726 WP_192227995.1 peptidoglycan editing factor PgeF -
  MOQ58_RS25325 (MOQ58_25285) rluD 5552454..5553416 (-) 963 WP_008028788.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MOQ58_RS25330 (MOQ58_25290) - 5553568..5554590 (+) 1023 WP_008028792.1 outer membrane protein assembly factor BamD -
  MOQ58_RS25335 (MOQ58_25295) - 5554726..5554959 (+) 234 WP_008037883.1 PP0621 family protein -
  MOQ58_RS25340 (MOQ58_25300) pilS 5554949..5556538 (+) 1590 WP_280162243.1 ATP-binding protein Regulator
  MOQ58_RS25345 (MOQ58_25305) pilR 5556541..5557872 (+) 1332 WP_280162244.1 sigma-54 dependent transcriptional regulator Regulator
  MOQ58_RS25350 (MOQ58_25310) thiO 5558002..5559102 (-) 1101 WP_280162245.1 glycine oxidase ThiO -
  MOQ58_RS25355 (MOQ58_25315) - 5559158..5559556 (-) 399 WP_008028801.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58522.43 Da        Isoelectric Point: 7.1903

>NTDB_id=664663 MOQ58_RS25340 WP_280162243.1 5554949..5556538(+) (pilS) [Pseudomonas migulae strain 8R6]
MIAETSSPGSKQAQRLLRLYHLYRLSVGITLVLLISSNLDNQLLTFANDSLLRSGSWLYLVLNILLVVFFENTRRPAQLF
SLALIDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRSRIGLLIAAVGALGIVGLSFLLSFSHPASPNDYLQAGTLG
VLCFAAALLVQGLIQRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDGQLRVQLANHSALILLGRDHLEGQRIA
DCSPILVERLQLWRNNPTLRPQSLKIANSGLELQPSFIALAQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEQFVADSRESALDR
QQIHLRIGSGDFKTLMDPNQLTQILDNLLRNAWRHSAQVHDQAQVWLDLFVDPDSQLPIIEVRDDGPGVAPDQQVHLFEP
FYTTSAQGTGLGLYLSRELCESNQARLDFKPRHDGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=664663 MOQ58_RS25340 WP_280162243.1 5554949..5556538(+) (pilS) [Pseudomonas migulae strain 8R6]
GTGATCGCTGAGACGTCCAGTCCCGGCAGCAAACAGGCTCAGCGACTGCTGCGCCTTTATCACCTCTACCGTCTAAGCGT
CGGCATCACCTTGGTGCTGCTGATCTCCAGCAACCTGGACAACCAGTTGCTGACGTTCGCCAATGACAGCCTGTTGCGCA
GTGGCAGCTGGCTGTACCTGGTGCTGAACATCTTGCTGGTGGTCTTCTTCGAGAACACCCGCCGCCCGGCGCAACTGTTC
AGCCTGGCGCTGATTGATGTCCTGCTGCTGTGTGGCTTGTTCTACGCCGCCGGCGGTGTCGCCAGCGCCATCGGCAACTT
GCTGATCGTCTCGGTGGCCATCAGTAACACCTTGTTGCGAAGCCGCATCGGCCTGCTGATCGCCGCCGTGGGCGCGCTCG
GCATCGTCGGGCTGAGCTTTCTCCTGAGTTTCAGCCATCCCGCCAGCCCCAACGATTACCTGCAAGCCGGCACCCTCGGT
GTGTTGTGCTTTGCCGCGGCGTTGCTGGTGCAAGGCTTGATCCAGCGCCTGGAAGTCAGCGAAACCCTCGCCGAACAACG
GGCCAGCGAAGTGGTCGGCCTCGAAGCCCTCAATGCATTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACG
GCCAACTACGGGTGCAATTGGCCAACCACAGCGCGCTGATCTTACTGGGCCGAGACCATCTCGAAGGCCAACGGATCGCC
GACTGCTCGCCCATTCTGGTCGAACGCCTGCAACTGTGGCGGAACAATCCGACGCTGCGCCCCCAGAGCCTGAAAATCGC
CAACAGCGGCCTGGAACTGCAACCGAGCTTCATTGCCCTGGCCCAAAGCCCACACCACCAAACCCTGGTCTTCCTTGAGG
ATCTCGCACAAATCGCCCAACAGGCCCAACAACTGAAGCTCGCCGCTTTGGGCCGCCTGACGGCCGGTATCGCCCACGAA
ATTCGCAATCCTCTGGGCGCCATTAGTCATGCCGCTCAGCTATTGCAGGAATCGGAGGAACTGAACGGCGCGGATCGACG
TCTGACCCAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGTACCGCAACGACTCGATCTGAAGCCGTGGCTGGAGCAGTTCGTGGCCGACAGTCGCGAAAGTGCGCTCGATCGT
CAGCAGATTCACCTGCGCATCGGTTCAGGCGACTTCAAAACCCTGATGGACCCGAACCAGCTCACCCAGATTCTCGACAA
TTTGTTGCGCAACGCCTGGCGTCATAGCGCCCAGGTCCACGATCAAGCGCAGGTCTGGCTCGATTTGTTTGTCGACCCCG
ACAGCCAGTTGCCGATCATCGAGGTTCGGGACGATGGCCCCGGCGTGGCACCGGACCAGCAGGTGCATTTGTTCGAACCG
TTCTATACCACCAGCGCCCAAGGCACAGGCCTGGGGCTGTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAGGCCCGCCT
AGACTTCAAGCCACGCCATGATGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603