Detailed information NTG0664664

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: MOQ58_RS25345
• Genome accession: NZ_CP093428
• Coordinates: 5556541..5557872 (+)
• Length: 443 a.a.
• NCBI ID: WP_280162244.1
• Uniprot ID: -
• Organism: Pseudomonas migulae strain 8R6
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5551541..5562872

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MOQ58_RS25320 (MOQ58_25280)	pgeF	5551732..5552457 (-)	726	WP_192227995.1	peptidoglycan editing factor PgeF	-
MOQ58_RS25325 (MOQ58_25285)	rluD	5552454..5553416 (-)	963	WP_008028788.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
MOQ58_RS25330 (MOQ58_25290)	-	5553568..5554590 (+)	1023	WP_008028792.1	outer membrane protein assembly factor BamD	-
MOQ58_RS25335 (MOQ58_25295)	-	5554726..5554959 (+)	234	WP_008037883.1	PP0621 family protein	-
MOQ58_RS25340 (MOQ58_25300)	pilS	5554949..5556538 (+)	1590	WP_280162243.1	ATP-binding protein	Regulator
MOQ58_RS25345 (MOQ58_25305)	pilR	5556541..5557872 (+)	1332	WP_280162244.1	sigma-54 dependent transcriptional regulator	Regulator
MOQ58_RS25350 (MOQ58_25310)	thiO	5558002..5559102 (-)	1101	WP_280162245.1	glycine oxidase ThiO	-
MOQ58_RS25355 (MOQ58_25315)	-	5559158..5559556 (-)	399	WP_008028801.1	type IV pilin protein	-
MOQ58_RS25360 (MOQ58_25320)	-	5559571..5562684 (-)	3114	WP_280162246.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 443 a.a.
• Molecular weight: 49418.79 Da
• Isoelectric Point: 6.6153

>NTDB_id=664664 MOQ58_RS25345 WP_280162244.1 5556541..5557872(+) (pilR) [Pseudomonas migulae strain 8R6]
MCPRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLKRETFDLCLTDMRLPDGTGLELVQHIQQRAPNLPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRMPAPGAAIDRQLLGDSLPMRSLRKQIDKLARSQAPVYIS
GESGSGKELVARLIHEQGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAQGGTLFLDEVADLPLS
MQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIESLAGHVLK
RLAAASGQPVPKLHPQALEALKSYRFPGNVRELENMLERAHTLCDNKQIEASDLRLAEGNCSADSGVPDLTQIDNLEDYL
ENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKFGLD

Nucleotide

• Length: 1332 bp

>NTDB_id=664664 MOQ58_RS25345 WP_280162244.1 5556541..5557872(+) (pilR) [Pseudomonas migulae strain 8R6]
ATGTGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCTTCAGCGCCCGTAACCTCGGCGAAGCCCAGGCGCTGTTGAAGCGTGAGACCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCGGACGGCACCGGTCTTGAGCTGGTGCAACATATCCAGCAACGCGCCCCAAACCTGCCGGTGGCC
ATGATTACCGCCTACGGCAGCCTCGAAACGGCGATCAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAACCGGT
GGACCTCACGCGATTGCGTGAACTGGTCACCAGCGCCCTGCGCATGCCGGCACCGGGCGCAGCCATCGACCGACAGTTGC
TGGGCGATTCGCTGCCCATGCGCAGCCTGCGTAAACAAATCGACAAACTGGCCCGCAGTCAGGCGCCGGTCTACATCAGC
GGCGAATCCGGCAGCGGCAAGGAACTGGTCGCCCGACTGATCCACGAACAAGGACCGCGCGCCAACCAGCCGTTTGTCCC
GGTCAATTGCGGCGCGATACCGTCGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGTTTCAGCGGCGCTA
TCGAAGACAAGCCCGGGCTGTTCCAGGCCGCCCAGGGTGGCACGCTGTTCCTCGACGAAGTGGCCGACTTGCCGCTGTCG
ATGCAGGTCAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTTCGCAGCGTTGGCGGCCAGCAGGAAACCGTGGTCGATGT
GCGGATCCTCTGCGCCACCCACAAAGACCTCGACGCCGAAGTCGCCGCTGAACGTTTTCGCCAGGATTTGTATTACCGGC
TGAATGTGATCGAACTGCGGGTTCCGCCTTTGCGCGAGCGCCGCGACGACATCGAGTCATTGGCCGGTCATGTACTCAAG
CGTCTGGCGGCAGCCAGCGGCCAACCCGTCCCGAAGCTCCACCCACAAGCGCTTGAAGCGCTGAAAAGCTATCGCTTTCC
GGGCAATGTGCGGGAACTGGAGAACATGCTCGAACGCGCCCACACCCTGTGCGACAACAAGCAGATCGAAGCCAGCGACC
TGCGACTGGCCGAAGGCAATTGCAGCGCCGACAGCGGTGTGCCGGACCTGACGCAGATCGACAATCTGGAAGACTATCTG
GAAAACGTCGAACGAAAACTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCAGCGGCTCAGCGATTGAA
TTTGTCGTTTCGGTCGATGCGTTACCGGTTGAAGAAATTCGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (400-440)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.33	100	0.783
pilR	Acinetobacter baumannii strain A118	49.13	100	0.51
luxO	Vibrio cholerae strain A1552	36.18	100	0.363