Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MOQ58_RS21870 Genome accession   NZ_CP093428
Coordinates   4789880..4790518 (-) Length   212 a.a.
NCBI ID   WP_008045105.1    Uniprot ID   J3B498
Organism   Pseudomonas migulae strain 8R6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4784880..4795518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOQ58_RS21835 (MOQ58_21790) - 4785267..4785737 (-) 471 WP_008031566.1 (2Fe-2S)-binding protein -
  MOQ58_RS21840 (MOQ58_21795) murB 4785985..4787004 (-) 1020 WP_008031565.1 UDP-N-acetylmuramate dehydrogenase -
  MOQ58_RS21845 (MOQ58_21800) - 4787001..4787471 (-) 471 WP_280161924.1 low molecular weight protein-tyrosine-phosphatase -
  MOQ58_RS21850 (MOQ58_21805) kdsB 4787471..4788235 (-) 765 WP_192420260.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MOQ58_RS21855 (MOQ58_21810) - 4788232..4788417 (-) 186 WP_007945752.1 Trm112 family protein -
  MOQ58_RS21860 (MOQ58_21815) lpxK 4788442..4789452 (-) 1011 WP_008031560.1 tetraacyldisaccharide 4'-kinase -
  MOQ58_RS21865 (MOQ58_21820) - 4789452..4789883 (-) 432 WP_280161925.1 biopolymer transporter ExbD -
  MOQ58_RS21870 (MOQ58_21825) exbB 4789880..4790518 (-) 639 WP_008045105.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MOQ58_RS21875 (MOQ58_21830) comA 4790617..4792839 (-) 2223 WP_280161926.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MOQ58_RS21880 (MOQ58_21835) - 4792975..4793493 (+) 519 WP_280161927.1 DUF2062 domain-containing protein -
  MOQ58_RS21885 (MOQ58_21840) - 4794374..4795153 (-) 780 WP_008032943.1 ABC transporter permease -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23083.33 Da        Isoelectric Point: 7.3618

>NTDB_id=664657 MOQ58_RS21870 WP_008045105.1 4789880..4790518(-) (exbB) [Pseudomonas migulae strain 8R6]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLTEGKKA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=664657 MOQ58_RS21870 WP_008045105.1 4789880..4790518(-) (exbB) [Pseudomonas migulae strain 8R6]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGTCGTGTGACCCCGGAACACTTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AGCAACTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCATTGGGCGAGATTCTGGCGGCGGGCCTGGCCAAC
TCCAGACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCCGCACGGGTGATTCATGAGCTCGAACGCTACAT
CAATGCGCTGGGCACCATCGCCGCCATGGCGCCGTTGCTGGGTTTGCTCGGCACCGTGCTGGGCATGATCGATATTTTCA
GCGCGTTCATGGGGACGGGCATGGGCACCAATGCCGCCGTGTTGGCCGGTGGTATTTCGAAGGCCTTGATCACCACGGCT
GCTGGTCTGATGGTCGGTATCCCGGCGGTATTTTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAGCTGGTCGAGGTGGTACAGGGTGATCGTGACGTGGACCTGACCGAGGGCAAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3B498

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.238

99.057

0.844