Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG254_RS27090 Genome accession   NZ_CP108659
Coordinates   5936117..5936716 (+) Length   199 a.a.
NCBI ID   WP_186283470.1    Uniprot ID   A0A7X1J4S8
Organism   Streptomyces sp. NBC_01092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5931117..5941716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG254_RS27070 (OG254_27005) - 5931146..5932549 (+) 1404 WP_405586525.1 M20/M25/M40 family metallo-hydrolase -
  OG254_RS27075 (OG254_27010) - 5932699..5934573 (+) 1875 WP_405586527.1 LamG-like jellyroll fold domain-containing protein -
  OG254_RS27080 (OG254_27015) - 5934633..5935385 (-) 753 WP_351190770.1 SLATT domain-containing protein -
  OG254_RS27085 (OG254_27020) - 5935678..5936022 (+) 345 WP_351190772.1 YbaB/EbfC family nucleoid-associated protein -
  OG254_RS27090 (OG254_27025) recR 5936117..5936716 (+) 600 WP_186283470.1 recombination mediator RecR Machinery gene
  OG254_RS27095 (OG254_27030) - 5936709..5937371 (+) 663 WP_405586532.1 DUF5063 domain-containing protein -
  OG254_RS27100 (OG254_27035) - 5937379..5938215 (-) 837 WP_405586534.1 PhzF family phenazine biosynthesis protein -
  OG254_RS27105 (OG254_27040) - 5938394..5938810 (+) 417 WP_405586537.1 SsgA family sporulation/cell division regulator -
  OG254_RS27110 (OG254_27045) - 5938927..5939121 (+) 195 WP_405586540.1 hypothetical protein -
  OG254_RS27115 (OG254_27050) - 5939259..5939771 (+) 513 WP_405586543.1 SgcJ/EcaC family oxidoreductase -
  OG254_RS27120 (OG254_27055) - 5939737..5941089 (-) 1353 WP_405586546.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21778.17 Da        Isoelectric Point: 4.9909

>NTDB_id=664598 OG254_RS27090 WP_186283470.1 5936117..5936716(+) (recR) [Streptomyces sp. NBC_01092]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNIAQEELCNICRDARRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=664598 OG254_RS27090 WP_186283470.1 5936117..5936716(+) (recR) [Streptomyces sp. NBC_01092]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGTCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAACCGACGGATGTACGGCGCCTCGCCCAGGCCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACGTGCGGGAACATCGCGCAGGAGGAGCTGTGCAACATCTGCCGGGACGCGCGCCGCGACCCGGCGGTG
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGCGGCCGTTATCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGTGTCGGACCGGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGGA
CGGTCACGGAGCTGATCCTGGCCACCGACCCGAATCTCGAGGGCGAGGCCACCGCCACGTACCTCGCACGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X1J4S8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452