Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG596_RS25735 Genome accession   NZ_CP108654
Coordinates   5759475..5760560 (+) Length   361 a.a.
NCBI ID   WP_405393234.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01102     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5754475..5765560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG596_RS25720 (OG596_25660) - 5754570..5755898 (+) 1329 WP_405390944.1 deoxyguanosinetriphosphate triphosphohydrolase -
  OG596_RS25725 (OG596_25665) - 5756018..5757277 (+) 1260 WP_405390945.1 NAD(P)/FAD-dependent oxidoreductase -
  OG596_RS25730 (OG596_25670) dnaG 5757370..5759277 (+) 1908 WP_405390946.1 DNA primase -
  OG596_RS25735 (OG596_25675) rpoS 5759475..5760560 (+) 1086 WP_405393234.1 RNA polymerase sigma factor Regulator
  OG596_RS25740 (OG596_25680) - 5760742..5761011 (+) 270 WP_405390947.1 hypothetical protein -
  OG596_RS25745 (OG596_25685) - 5760957..5762882 (-) 1926 WP_405390948.1 ABC transporter ATP-binding protein -
  OG596_RS25750 (OG596_25690) rcrP 5762882..5764615 (-) 1734 WP_405390949.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 40729.43 Da        Isoelectric Point: 5.6260

>NTDB_id=664533 OG596_RS25735 WP_405393234.1 5759475..5760560(+) (rpoS) [Streptomyces sp. NBC_01102]
MQTRTVTTTTERVPAIPAQNRATRRPEAAAPPPDAPDPVMEEPVEAPEPPERRRPETGGPSSDLFRQYLREIGRIPLLTA
AEEVDLARRVEAGLFAEERLAGTPDPDSRLAFDLDRIVVMGRVAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLG
LIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGYEPTSEEVAVQLDLTP
ERVGEVLRLAQEPVSLHAPVGEEDDVAFGDLIEDGDAASPVESAAFLLLREHLEVVLSTLGERERKVVQLRYGLDDGRPR
TLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=664533 OG596_RS25735 WP_405393234.1 5759475..5760560(+) (rpoS) [Streptomyces sp. NBC_01102]
GTGCAGACCCGGACCGTGACGACCACGACCGAACGTGTCCCGGCGATTCCCGCGCAGAACCGGGCCACGCGCCGTCCGGA
GGCGGCCGCCCCGCCCCCGGACGCACCCGACCCGGTGATGGAGGAACCGGTGGAGGCCCCCGAGCCCCCGGAGCGGCGCC
GGCCGGAGACCGGTGGCCCGTCGTCCGACCTCTTCCGCCAGTACCTGCGGGAGATCGGCCGTATCCCGCTGCTCACCGCA
GCGGAGGAGGTGGATCTCGCCCGCCGCGTCGAGGCGGGGCTCTTCGCCGAGGAACGTCTGGCGGGCACCCCCGACCCGGA
CTCCCGGCTCGCGTTCGACCTGGACCGGATCGTCGTCATGGGACGGGTGGCGAAGCGCCGCCTCATCGAGGCCAACCTGC
GCCTCGTCGTCTCGGTGGCCAAGCGGTACGTCGGCCGGGGCCTGACCATGCTCGACCTGGTCCAGGAGGGGAACCTGGGA
CTGATCAGGGCGGTCGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCCACCTGGTGGATCCGCCAGGC
GATGTCCCGGGCCCTCGCCGACCAGGCCCGGACCATCAGGGTCCCGGTCCATGTCGTCGAGCTGATCAACCGCGTCGTAC
GCGTCCAGCGCCGCCTGCTCCAGGAACGCGGCTACGAGCCGACCTCCGAGGAGGTCGCGGTCCAGCTCGACCTGACACCC
GAGCGGGTCGGCGAGGTCCTGCGCCTCGCCCAGGAACCCGTCTCGCTGCACGCCCCCGTCGGAGAGGAGGACGACGTGGC
CTTCGGGGACCTCATCGAGGACGGCGACGCCGCCTCACCCGTCGAGTCCGCCGCCTTCCTCCTTCTGCGCGAACACCTGG
AGGTGGTCCTCTCCACGCTGGGCGAGCGCGAGCGGAAGGTCGTCCAGCTGCGCTACGGACTGGACGACGGACGGCCCCGC
ACCCTTGAGGAGATAGGCCGCATCTTCGGCGTGACCCGCGAGCGCATCCGGCAGATCGAGTCCAAGACCCTGAACAAACT
CCGCGACCACGCCTTCGCCGACCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(207-283)

Sigma-70, region 4 (Sigma70_r4)

(296-348)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(63-96)

Sigma-70 region 2 (Sigma70_r2)

(128-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.29

95.568

0.385