Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG596_RS25750 Genome accession   NZ_CP108654
Coordinates   5762882..5764615 (-) Length   577 a.a.
NCBI ID   WP_405390949.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01102     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5757882..5769615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG596_RS25735 (OG596_25675) rpoS 5759475..5760560 (+) 1086 WP_405393234.1 RNA polymerase sigma factor Regulator
  OG596_RS25740 (OG596_25680) - 5760742..5761011 (+) 270 WP_405390947.1 hypothetical protein -
  OG596_RS25745 (OG596_25685) - 5760957..5762882 (-) 1926 WP_405390948.1 ABC transporter ATP-binding protein -
  OG596_RS25750 (OG596_25690) rcrP 5762882..5764615 (-) 1734 WP_405390949.1 ABC transporter ATP-binding protein Regulator
  OG596_RS25755 (OG596_25695) - 5764770..5766215 (-) 1446 WP_405390950.1 FGGY family carbohydrate kinase -
  OG596_RS25760 (OG596_25700) - 5766286..5766597 (-) 312 WP_405390951.1 YtxH domain-containing protein -
  OG596_RS25780 (OG596_25720) - 5767790..5768521 (-) 732 WP_405390952.1 DUF305 domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62572.72 Da        Isoelectric Point: 5.5654

>NTDB_id=664534 OG596_RS25750 WP_405390949.1 5762882..5764615(-) (rcrP) [Streptomyces sp. NBC_01102]
MLIKLLRTYLGPYRRPILLLVLLQLLQTCATLYLPSLNADIIDNGVVKGDTGYILRFGGVMIVVSLAQVLCNVGAVYYGA
RTASALGRDVRASVFDRVQSFSAREFGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGANTELTAVALSTGRLMAL
MFPTVMTVVNLSSVAVVWFGAHRIESGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PAAPVTELLTHGHLEVRGAEFRYPGAEEPVLRSVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGDVLVGGTDVR
TVDPVLLARTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVELLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALARETAGATVVIVAQRVSTIRDADRIVVLDEGRVVGTGSHRELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=664534 OG596_RS25750 WP_405390949.1 5762882..5764615(-) (rcrP) [Streptomyces sp. NBC_01102]
GTGCTCATAAAACTCCTGCGGACCTATCTCGGTCCGTACAGACGACCGATCCTGCTGCTGGTGCTGCTCCAGCTCCTGCA
GACCTGCGCCACGCTGTATCTGCCCAGCCTCAACGCCGACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTGAGGTTCGGCGGCGTGATGATCGTCGTCAGCCTCGCCCAGGTCCTTTGCAACGTCGGCGCCGTCTACTACGGCGCC
CGGACCGCCTCCGCGCTGGGACGTGACGTACGCGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCACGCGAGTTCGG
CCGCTTCGGTGCTCCGTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTCGTCCTGATGGCGTTCA
CCCTGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTGTCGGCGGTG
CTGCTGGCAGTGGTGCCGGTGCTCGGCATCGCGGTGAGCCTCATCGTCAGGAAGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGGGCCTTCGTCCGTGACG
GCTACGAGGAGGAGCGCTTCCGGGGCGCCAACACCGAGCTGACGGCCGTCGCCCTGTCGACGGGCCGGCTGATGGCGCTC
ATGTTCCCGACCGTGATGACGGTGGTGAACCTGTCGTCCGTCGCCGTGGTCTGGTTCGGCGCGCACCGCATCGAGAGCGG
CGGGATGCAGATCGGTGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGCCGCCCCGGTCACCGAGCTGCTCACCCACGGCCATCTGGAGGTACGGGGCGCCGAGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGCGCTCGGTCGATCTGGTGGCGCGGCCCGGCGAGACGACCGCGGTCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGTGACGGACGGCGATGTGCTGGTCGGGGGTACGGACGTGCGG
ACGGTGGATCCCGTCCTGCTGGCGAGGACCGTGAGCCTGGTGCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGGAACCCCGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCCCAGGCGAAGGAATTCG
TGGAGCTGCTGGAGCACGGTCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTGGACTACGCGACGGA
CGCGGCGCTGCGCGGTGCGCTCGCCCGGGAGACGGCGGGAGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCGTGGTGCTGGACGAGGGCCGGGTCGTCGGGACGGGCAGTCACCGTGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.519

100

0.399