Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG596_RS20410 Genome accession   NZ_CP108654
Coordinates   4558152..4558751 (+) Length   199 a.a.
NCBI ID   WP_031090791.1    Uniprot ID   A0ABW0B8K0
Organism   Streptomyces sp. NBC_01102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4553152..4563751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG596_RS20385 (OG596_20335) - 4553530..4554906 (+) 1377 WP_405390022.1 aspartate aminotransferase family protein -
  OG596_RS20390 (OG596_20340) - 4554974..4555693 (+) 720 WP_405390023.1 GntR family transcriptional regulator -
  OG596_RS20395 (OG596_20345) - 4555840..4556490 (+) 651 WP_405390024.1 hypothetical protein -
  OG596_RS20400 (OG596_20350) - 4556587..4557372 (-) 786 WP_405390025.1 SLATT domain-containing protein -
  OG596_RS20405 (OG596_20355) - 4557743..4558075 (+) 333 WP_405393163.1 YbaB/EbfC family nucleoid-associated protein -
  OG596_RS20410 (OG596_20360) recR 4558152..4558751 (+) 600 WP_031090791.1 recombination mediator RecR Machinery gene
  OG596_RS20415 (OG596_20365) - 4558835..4559494 (+) 660 WP_405390026.1 DUF5063 domain-containing protein -
  OG596_RS20420 (OG596_20370) - 4559771..4561042 (+) 1272 WP_405390027.1 aspartate kinase -
  OG596_RS20425 (OG596_20375) - 4561039..4562103 (+) 1065 WP_405390028.1 aspartate-semialdehyde dehydrogenase -
  OG596_RS20430 (OG596_20380) - 4562462..4563037 (+) 576 WP_384502144.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21943.27 Da        Isoelectric Point: 5.1777

>NTDB_id=664517 OG596_RS20410 WP_031090791.1 4558152..4558751(+) (recR) [Streptomyces sp. NBC_01102]
MYEGVVQELIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCEICGNVAQQEQCGICRDARRDRTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=664517 OG596_RS20410 WP_031090791.1 4558152..4558751(+) (recR) [Streptomyces sp. NBC_01102]
TTGTACGAAGGCGTGGTTCAGGAGCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGCCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTACGCCGTCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GCTTCTGCGAGATCTGCGGCAACGTCGCCCAGCAGGAGCAGTGCGGGATCTGCCGGGACGCGCGGCGCGACCGGACGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTGCGGATCAGGGAGCTGCTGGCGCGGCTCGCGGACGGTT
CCATCACCGAGCTGATCCTGGCGACGGACCCCAACCTGGAGGGCGAGGCCACGGCGACGTACCTCGCCCGGATGGTCAAG
CCGATGGGCCTGCGGGTGACCCGGCTGGCCAGCGGCCTGCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACGCT
CGGCCGCGCGTTCGAGGGGAGGCGGCTGCTCGATGTGTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457