Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG450_RS17590 Genome accession   NZ_CP108652
Coordinates   4107757..4109169 (+) Length   470 a.a.
NCBI ID   WP_326670695.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4102757..4114169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG450_RS17575 (OG450_17550) - 4103607..4104557 (-) 951 WP_266780009.1 Ppx/GppA phosphatase family protein -
  OG450_RS17580 (OG450_17555) - 4104756..4105595 (+) 840 WP_405403864.1 hypothetical protein -
  OG450_RS17585 (OG450_17560) - 4105633..4107504 (-) 1872 WP_405403866.1 hypothetical protein -
  OG450_RS17590 (OG450_17565) radA/sms 4107757..4109169 (+) 1413 WP_326670695.1 DNA repair protein RadA Machinery gene
  OG450_RS17595 (OG450_17570) disA 4109339..4110463 (+) 1125 WP_266780013.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG450_RS17600 (OG450_17575) - 4110519..4111316 (-) 798 WP_266786245.1 hypothetical protein -
  OG450_RS17605 (OG450_17580) - 4111721..4112623 (+) 903 WP_405403869.1 A/G-specific adenine glycosylase -
  OG450_RS17610 (OG450_17585) - 4112848..4113492 (+) 645 WP_266780015.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49497.61 Da        Isoelectric Point: 8.4954

>NTDB_id=664429 OG450_RS17590 WP_326670695.1 4107757..4109169(+) (radA/sms) [Streptomyces sp. NBC_01104]
MATRTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRAQAPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=664429 OG450_RS17590 WP_326670695.1 4107757..4109169(+) (radA/sms) [Streptomyces sp. NBC_01104]
ATGGCCACCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTCCGCACCACCGCGGCCG
GCCGCGTCTCCACCGCCGCGCTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGCTCGACCGGTGTCGGCGAG
CTGGACCGGGTGCTGGGCGGCGGTCTCGTGCCCGGTGCCGTGGTGCTGCTCGCGGGCGAGCCGGGCGTCGGGAAGTCGAC
GCTGCTGCTGGACGTCGCGGCCAAGGCGGCGAGCGAGGAGCACCGCACGCTCTACGTCACCGCCGAGGAGTCCGCCAGTC
AGGTCCGGATGCGCGCCGACCGGATCCGGGCGATCAACGACCATCTCTATCTGGCGGCGGAGACCGACCTGTCCGCGGTT
CTCGGCCATCTGGACGCGGTCAAGCCGTCGCTGCTGGTCCTGGACTCCGTACAGACGGTCGCCTCCCCCGAGATCGACGG
CGCGCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGGGCGCTGATCCGCGCCTCCAAGGAGCGGGGCATGTCGACCC
TGCTGGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGGCCGCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTGTCC
TTCGAGGGCGACCGCCATGCCCGGCTGCGGCTCGTGCGCGGCGTGAAGAACCGCTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTCCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGCCTCTTCCTCACCCGGCGTGACGAGCCGGTGC
CCGGCACCTGCCTGACCGTGACCCTGGAGGGCAAGCGGCCCCTGGTCGCCGAGGTCCAGGCGCTCACCGTCGACTCCCAG
ATCCCCTCGCCCCGGCGCACCACCTCGGGTCTGGAGACGTCCCGCGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCTCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGGGTGAAGCTCTCGGAGCCCGCCGCGGACC
TCGCGATCGCCCTCGCGCTGGCCAGTGCGGCGAGCGACACACCGCTGCCCAAGAACCTGGTCGCGATCGGCGAGGTGGGT
CTCGCGGGCGAGGTCAGACGGGTCACGGGGGTCCAGCGCAGACTGGCCGAGGCACACCGTCTGGGCTTCACCCACGCGCT
CGTTCCGACCGATCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGCGACGCGCTCAGGGTGC
TCCCGCGCCGCTCTCGTGCACAGGCCCCACAGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(85-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

42.163

96.383

0.406
  radA Streptococcus pneumoniae D39

42.163

96.383

0.406
  radA Streptococcus pneumoniae R6

42.163

96.383

0.406
  radA Streptococcus pneumoniae TIGR4

42.163

96.383

0.406
  radA Streptococcus mitis SK321

43.59

91.277

0.398
  radA Streptococcus mitis NCTC 12261

43.59

91.277

0.398