Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | MON07_RS27745 | Genome accession | NZ_CP093395 |
| Coordinates | 5945399..5946271 (-) | Length | 290 a.a. |
| NCBI ID | WP_009875878.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PA1_NCHU | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5940399..5951271
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MON07_RS27700 (MON07_27700) | - | 5941260..5941430 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| MON07_RS27705 (MON07_27705) | - | 5941456..5941905 (-) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| MON07_RS27710 (MON07_27710) | - | 5941902..5942531 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| MON07_RS27715 (MON07_27715) | - | 5942664..5943089 (+) | 426 | WP_016562341.1 | GNAT family N-acetyltransferase | - |
| MON07_RS27720 (MON07_27720) | - | 5943086..5943556 (+) | 471 | WP_003103866.1 | hypothetical protein | - |
| MON07_RS27725 (MON07_27725) | - | 5943553..5944242 (+) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| MON07_RS27730 (MON07_27730) | - | 5944348..5944557 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| MON07_RS27735 (MON07_27735) | yacG | 5944594..5944794 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| MON07_RS27740 (MON07_27740) | coaE | 5944791..5945402 (-) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| MON07_RS27745 (MON07_27745) | pilD | 5945399..5946271 (-) | 873 | WP_009875878.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| MON07_RS27750 (MON07_27750) | pilC | 5946275..5947495 (-) | 1221 | WP_023101565.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| MON07_RS27755 (MON07_27755) | pilB | 5947499..5949199 (-) | 1701 | WP_021264132.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| MON07_RS27760 (MON07_27760) | pilA | 5949431..5949883 (+) | 453 | WP_023518088.1 | pilin | Machinery gene |
| MON07_RS27770 (MON07_27770) | nadC | 5950081..5950929 (-) | 849 | WP_242162148.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31811.84 Da Isoelectric Point: 7.7068
>NTDB_id=664354 MON07_RS27745 WP_009875878.1 5945399..5946271(-) (pilD) [Pseudomonas aeruginosa strain PA1_NCHU]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=664354 MON07_RS27745 WP_009875878.1 5945399..5946271(-) (pilD) [Pseudomonas aeruginosa strain PA1_NCHU]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATACTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATACTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |