Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG245_RS20265 Genome accession   NZ_CP108644
Coordinates   4634053..4634652 (+) Length   199 a.a.
NCBI ID   WP_097868467.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4629053..4639652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG245_RS20240 (OG245_20240) - 4629171..4630553 (+) 1383 WP_371624904.1 aspartate aminotransferase family protein -
  OG245_RS20245 (OG245_20245) - 4630752..4631510 (+) 759 WP_371624905.1 GntR family transcriptional regulator -
  OG245_RS20250 (OG245_20250) - 4631614..4632264 (+) 651 WP_371624906.1 hypothetical protein -
  OG245_RS20255 (OG245_20255) - 4632395..4633195 (-) 801 WP_371624907.1 SLATT domain-containing protein -
  OG245_RS20260 (OG245_20260) - 4633563..4633907 (+) 345 WP_003967515.1 YbaB/EbfC family nucleoid-associated protein -
  OG245_RS20265 (OG245_20265) recR 4634053..4634652 (+) 600 WP_097868467.1 recombination mediator RecR Machinery gene
  OG245_RS20270 (OG245_20270) - 4634814..4635473 (+) 660 WP_018961761.1 DUF5063 domain-containing protein -
  OG245_RS20275 (OG245_20275) - 4635610..4636452 (-) 843 WP_371624908.1 NAD(P)H-binding protein -
  OG245_RS20280 (OG245_20280) - 4636633..4637154 (+) 522 WP_371624909.1 SgcJ/EcaC family oxidoreductase -
  OG245_RS20285 (OG245_20285) - 4637473..4638483 (+) 1011 WP_371624910.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21901.19 Da        Isoelectric Point: 5.1721

>NTDB_id=664290 OG245_RS20265 WP_097868467.1 4634053..4634652(+) (recR) [Streptomyces sp. NBC_01116]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCEVCGNVAQQEQCGICRDARRDRSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=664290 OG245_RS20265 WP_097868467.1 4634053..4634652(+) (recR) [Streptomyces sp. NBC_01116]
TTGTACGAAGGCGTTGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACGGACGTACGCCGGCTCGCGCACGCGCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGAGGTGTGCGGCAACGTCGCGCAGCAGGAGCAGTGCGGGATCTGCCGGGACGCGCGCCGCGACCGGAGCGTC
ATCTGTGTGGTCGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGTGGCCGCTACCACGTGCTGGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGCGAGCTGCTGGCGCGGCTCGCGGACGGCT
CCATCACGGAGCTGATCCTCGCGACCGACCCCAATCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGGCTCAGGGTGACCCGGCTGGCCAGCGGCCTGCCGGTCGGCGGTGACCTGGAGTACGCCGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGGAGGCGGCTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447