Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG368_RS17840 Genome accession   NZ_CP108643
Coordinates   4080224..4080823 (-) Length   199 a.a.
NCBI ID   WP_031042987.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4075224..4085823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG368_RS17815 (OG368_17785) - 4075501..4076778 (-) 1278 WP_125629696.1 aspartate kinase -
  OG368_RS17820 (OG368_17790) - 4076977..4077555 (-) 579 WP_405408569.1 Uma2 family endonuclease -
  OG368_RS17825 (OG368_17795) - 4077606..4078589 (-) 984 WP_405408571.1 hypothetical protein -
  OG368_RS17830 (OG368_17800) - 4078944..4079579 (+) 636 WP_134654870.1 ankyrin repeat domain-containing protein -
  OG368_RS17835 (OG368_17805) - 4079572..4080231 (-) 660 WP_102932839.1 DUF5063 domain-containing protein -
  OG368_RS17840 (OG368_17810) recR 4080224..4080823 (-) 600 WP_031042987.1 recombination mediator RecR Machinery gene
  OG368_RS17845 (OG368_17815) - 4080909..4081256 (-) 348 WP_087808112.1 YbaB/EbfC family nucleoid-associated protein -
  OG368_RS17850 (OG368_17820) - 4081530..4082294 (+) 765 WP_197925363.1 SLATT domain-containing protein -
  OG368_RS17855 (OG368_17825) - 4083708..4085093 (-) 1386 Protein_3544 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21797.09 Da        Isoelectric Point: 4.9848

>NTDB_id=664200 OG368_RS17840 WP_031042987.1 4080224..4080823(-) (recR) [Streptomyces sp. NBC_01124]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEEQCNICRDTRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIDGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=664200 OG368_RS17840 WP_031042987.1 4080224..4080823(-) (recR) [Streptomyces sp. NBC_01124]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTCGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTCCTGCAGGCCGAGCCGACCGACGTACGGCGGCTCGCCCAGGCCCTCATGGAAGTGAAGGCCAAGGTCC
GCTTCTGCGCGACCTGCGGAAACGTCGCGCAGGAGGAGCAGTGCAACATCTGCCGCGACACCCGGCGCGACCCTTCCGTC
ATCTGCGTGGTGGAGGAGCCGAAGGACGTCGTCGCCATCGAGCGCACCCGTGAGTTCCGCGGGCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGACGGGGTCGGCCCCGACGACCTCCGCATCCGTGAGCTGCTGGCCCGCCTGGCGGACGGCA
CGGTCACGGAGCTGATCCTGGCCACGGACCCGAATCTGGAGGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCAGTGGGTGGCGACCTGGAGTACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

57.143

98.492

0.563
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452