Detailed information NTG0066413

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JCM16456_RS13025
• Genome accession: NZ_AP014635
• Coordinates: 2950127..2950996 (+)
• Length: 289 a.a.
• NCBI ID: WP_068715015.1
• Uniprot ID: -
• Organism: Vibrio tritonius strain AM2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2945127..2955996

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JCM16456_RS13005	nadC	2945658..2946545 (+)	888	WP_068715007.1	carboxylating nicotinate-nucleotide diphosphorylase	-
JCM16456_RS24350	-	2946746..2947165 (+)	420	WP_068715009.1	pilin	-
JCM16456_RS13015	-	2947162..2948823 (+)	1662	WP_068715011.1	GspE/PulE family protein	-
JCM16456_RS13020	-	2948816..2950033 (+)	1218	WP_068715013.1	type II secretion system F family protein	-
JCM16456_RS13025	pilD	2950127..2950996 (+)	870	WP_068715015.1	A24 family peptidase	Machinery gene
JCM16456_RS13030	coaE	2950998..2951606 (+)	609	WP_068715017.1	dephospho-CoA kinase	-
JCM16456_RS13035	zapD	2951638..2952378 (+)	741	WP_068715019.1	cell division protein ZapD	-
JCM16456_RS13040	yacG	2952420..2952614 (+)	195	WP_068715021.1	DNA gyrase inhibitor YacG	-
JCM16456_RS13045	-	2952682..2953314 (+)	633	WP_068715023.1	sigma-70 family RNA polymerase sigma factor	-
JCM16456_RS13050	-	2953311..2953562 (+)	252	WP_068715025.1	zf-HC2 domain-containing protein	-
JCM16456_RS13055	-	2953603..2953878 (+)	276	WP_068715027.1	DUF2282 domain-containing protein	-
JCM16456_RS13060	-	2953898..2954782 (+)	885	WP_068715029.1	DUF692 domain-containing protein	-
JCM16456_RS13065	-	2954766..2955524 (+)	759	WP_068715032.1	putative DNA-binding domain-containing protein	-
JCM16456_RS13070	-	2955518..2955982 (+)	465	WP_068715034.1	DoxX family protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32683.83 Da
• Isoelectric Point: 7.2368

>NTDB_id=66413 JCM16456_RS13025 WP_068715015.1 2950127..2950996(+) (pilD) [Vibrio tritonius strain AM2]
MDIFLYYPWIFTLFATVFGLIIGSFLNVVIHRLPRIMEQEWRQECAESFPEYNIAPPEQLLSLSKPRSRCPKCHTQIRAI
DNIPVVSWLLLKGRCHHCHEPISARYPCVEIITALACYLLANQFGYSPYSLGLMFFTFVLIAATFIDFDTLLLPDQLTLP
LLWAGLAMALLGFTSITLTDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILLSSLVGL
CFGLVQLKLQKQGLEKAFPFGPYLAIAGWISLLWGNSIIDWYLRSFLGW

Nucleotide

• Length: 870 bp

>NTDB_id=66413 JCM16456_RS13025 WP_068715015.1 2950127..2950996(+) (pilD) [Vibrio tritonius strain AM2]
ATGGACATTTTTCTATATTACCCTTGGATATTTACTCTGTTTGCTACCGTATTTGGTTTAATCATCGGCAGCTTTCTTAA
CGTTGTGATTCACCGCTTACCTCGTATCATGGAGCAAGAATGGCGCCAAGAGTGTGCAGAAAGCTTTCCGGAATACAACA
TAGCGCCGCCAGAGCAATTACTTTCGCTAAGCAAACCACGTTCTCGCTGTCCAAAGTGTCACACCCAGATCCGAGCAATT
GATAATATTCCTGTTGTCAGTTGGTTATTGCTTAAAGGACGCTGTCATCATTGTCACGAGCCGATTTCTGCTCGCTATCC
CTGTGTAGAAATAATAACAGCGCTCGCGTGCTACCTCTTGGCTAACCAGTTTGGTTACAGCCCCTACTCTCTAGGGCTAA
TGTTTTTTACCTTCGTCTTAATCGCAGCGACCTTTATCGACTTTGATACCCTTCTTTTGCCGGATCAACTTACCTTACCT
CTATTGTGGGCTGGATTGGCGATGGCATTATTGGGGTTTACCTCTATCACTCTCACAGACGCAGTGATTGGAGCAATGGC
CGGATATTTGGTGTTATGGTCTCTCTACTGGGCATTTAAATTGCTGACAGGAAAAGAAGGCATGGGCTATGGTGACTTTA
AGTTGCTCGCGGCATTAGGCGCATGGTTAGGTTGGCAACAATTGCCGATTATTATCCTACTCTCTTCTTTGGTTGGCCTG
TGCTTTGGTCTAGTGCAATTAAAACTGCAAAAACAAGGATTAGAGAAAGCATTCCCGTTTGGCCCTTATCTAGCAATAGC
AGGATGGATTAGTCTACTTTGGGGTAACTCGATCATCGATTGGTATTTGCGTTCATTTTTAGGTTGGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	70.139	99.654	0.699
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	53.383	92.042	0.491
pilD	Acinetobacter baumannii D1279779	52.632	92.042	0.484
pilD	Neisseria gonorrhoeae MS11	47.253	94.464	0.446