Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   JCM16456_RS12955 Genome accession   NZ_AP014635
Coordinates   2932614..2933231 (+) Length   205 a.a.
NCBI ID   WP_068714989.1    Uniprot ID   -
Organism   Vibrio tritonius strain AM2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2927614..2938231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCM16456_RS12930 panC 2928117..2928995 (+) 879 WP_068714979.1 pantoate--beta-alanine ligase -
  JCM16456_RS12935 - 2929065..2929835 (-) 771 WP_068714981.1 ABC transporter permease -
  JCM16456_RS12940 - 2929844..2930758 (-) 915 WP_068714983.1 ABC transporter ATP-binding protein -
  JCM16456_RS12945 can 2931019..2931687 (+) 669 WP_068714985.1 carbonate dehydratase -
  JCM16456_RS12950 hpt 2931754..2932284 (-) 531 WP_068714987.1 hypoxanthine phosphoribosyltransferase -
  JCM16456_RS12955 hapR 2932614..2933231 (+) 618 WP_068714989.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  JCM16456_RS12960 lpdA 2933341..2934768 (-) 1428 WP_068714991.1 dihydrolipoyl dehydrogenase -
  JCM16456_RS12965 aceF 2935014..2936906 (-) 1893 WP_068714993.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23530.77 Da        Isoelectric Point: 5.5974

>NTDB_id=66412 JCM16456_RS12955 WP_068714989.1 2932614..2933231(+) (hapR) [Vibrio tritonius strain AM2]
MDASIEKRPRTRLSPQKRKHQLMEIALEVFAKRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDDVLTFVVRQFSNFL
TDNIDLDLPARQNLSTISDGIVNLAIDDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQMLLKNMFAKAIERGELSSDYDA
EDMATLFHGICYSLFVQANRVRNESSVHKLVNHYLDMLCIYNEVA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=66412 JCM16456_RS12955 WP_068714989.1 2932614..2933231(+) (hapR) [Vibrio tritonius strain AM2]
ATGGATGCTTCAATAGAAAAACGCCCAAGAACCCGTTTATCACCTCAAAAACGTAAACATCAGCTAATGGAAATAGCGTT
AGAAGTGTTTGCAAAACGTGGTATTGGTCGTGGTGGTCACGCAGATATTGCCGATATAGCGCAAGTATCAGTGGCAACAG
TATTTAACTACTTCCCAACTCGCGAAGATCTCGTCGATGACGTATTGACCTTCGTAGTTCGTCAATTCTCTAACTTCCTA
ACTGACAACATCGACCTAGATCTACCTGCTCGCCAAAATTTGTCGACCATCTCAGATGGTATCGTCAACTTAGCGATTGA
TGATTGTCACTGGCTAAAAGTATGGTTTGAATGGAGCGCTTCAACTCGTGATGAAGTATGGCCTCTATTTGTATCGACTA
ATCGTACTAACCAGATGTTACTCAAAAACATGTTTGCAAAAGCGATCGAACGCGGTGAACTTAGCAGCGATTACGACGCA
GAAGACATGGCAACCTTGTTCCACGGTATTTGTTACTCCCTTTTCGTACAAGCTAACCGTGTCCGCAACGAAAGCAGTGT
TCACAAACTCGTGAATCACTACCTCGACATGCTATGTATCTATAACGAAGTGGCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

77.114

98.049

0.756
  hapR Vibrio cholerae strain A1552

77.114

98.049

0.756
  opaR Vibrio parahaemolyticus RIMD 2210633

76.382

97.073

0.741

Multiple sequence alignment