Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG762_RS19000 Genome accession   NZ_CP108632
Coordinates   4195857..4197266 (+) Length   469 a.a.
NCBI ID   WP_405885599.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01136     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4190857..4202266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG762_RS18985 (OG762_19070) - 4191517..4192449 (-) 933 WP_405880518.1 Ppx/GppA family phosphatase -
  OG762_RS18990 (OG762_19075) - 4192521..4193381 (+) 861 WP_405880520.1 hypothetical protein -
  OG762_RS18995 (OG762_19080) - 4193470..4195287 (-) 1818 WP_405880521.1 BACON domain-containing protein -
  OG762_RS19000 (OG762_19085) radA/sms 4195857..4197266 (+) 1410 WP_405885599.1 DNA repair protein RadA Machinery gene
  OG762_RS19005 (OG762_19090) disA 4197346..4198470 (+) 1125 WP_405880523.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG762_RS19010 (OG762_19095) - 4198614..4199429 (-) 816 WP_405880524.1 hypothetical protein -
  OG762_RS19015 (OG762_19100) - 4199789..4200712 (+) 924 WP_405880525.1 A/G-specific adenine glycosylase -
  OG762_RS19020 (OG762_19105) - 4200981..4201532 (+) 552 WP_405880526.1 SigE family RNA polymerase sigma factor -
  OG762_RS19025 (OG762_19110) - 4201520..4202230 (+) 711 WP_405880527.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49762.00 Da        Isoelectric Point: 8.2598

>NTDB_id=664102 OG762_RS19000 WP_405885599.1 4195857..4197266(+) (radA/sms) [Streptomyces sp. NBC_01136]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKAIHDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPPGMKVLEVADMGDALRVLPRSRRREAPREEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=664102 OG762_RS19000 WP_405885599.1 4195857..4197266(+) (radA/sms) [Streptomyces sp. NBC_01136]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGGACGACGGCACCGGGCC
GCGTCACCACCTCCGCCGTGCCGATCGGGCAGGTCGACGGCCGCCAGGCCACCGCGCGCTCGACCGGCGTGCCCGAGCTG
GACCGCGTCCTCGGCGGCGGTCTCGTACCGGGCGCGGTCGTCCTGCTCGCGGGCGAGCCCGGCGTGGGCAAGTCCACGCT
CCTCCTGGACGTGGCGGCGAAGGCGGCGAGCGACGAGCACCGCACGCTGTACGTGACGGGTGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCGATCCACGACCACCTGTATCTCGCCGCCGAAACCGACCTGTCCGCCGTCCTC
GGCCACTTGGACGCGGTGAAGCCCTCGCTCCTCATCCTGGACTCGGTCCAGACCATCGCCTCCCCGGAGATCGACGGGGC
TCCCGGCGGCATGGCACAGGTCCGGGAGGTCGCCGGAGCGCTCATCCGGGCGTCCAAGGAGCGCGGTATGTCCACGCTCC
TTGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCGCGCCTGCTCGAACACCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTGCGTCTCGTCCGCGGGGTCAAGAACCGGTACGGGGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCCTCCGGCCTCTTCCTCACCCGCCGCGCCGAACCCGTCCCCG
GCACCTGCCTGACCGTCACCCTCGAAGGACGCCGCCCGCTGGTCGCCGAGGTGCAGGCCCTCACCGTCGACTCTCAGATC
CCCTCCCCCCGCCGTACGACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCGGTGCTGGAGCAGCGGGGCCG
GATCAGCGCCCTCGGAAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCGGCCGCGGACCTCG
CGATCGCGCTCGCGCTGGCGTCCGCCGCGAGTGACACCCCGCTCCCCAAGAACCTCGTGGCGATCGGCGAAGTGGGTCTC
GCGGGCGAGGTCAGACGGGTCACGGGAGTGCAGCGGCGGCTCGCGGAAGCCCACCGTCTGGGCTTCACTCACGCCCTCGT
TCCGAGCGATCCGGGCAAGATCCCTCCCGGTATGAAGGTCCTGGAAGTCGCCGACATGGGGGACGCGCTGCGGGTCCTTC
CACGCTCCCGTCGCAGGGAGGCCCCACGGGAGGAGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus mitis SK321

43.333

95.949

0.416
  radA Streptococcus mitis NCTC 12261

43.333

95.949

0.416
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412