Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   JCM16456_RS10830 Genome accession   NZ_AP014635
Coordinates   2448396..2449805 (-) Length   469 a.a.
NCBI ID   WP_068714228.1    Uniprot ID   -
Organism   Vibrio tritonius strain AM2     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2443396..2454805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCM16456_RS10790 - 2443525..2443941 (-) 417 WP_068714221.1 CBS domain-containing protein -
  JCM16456_RS10795 moaE 2444113..2444568 (-) 456 WP_068714222.1 molybdopterin synthase catalytic subunit MoaE -
  JCM16456_RS10800 moaD 2444570..2444815 (-) 246 WP_068714223.1 molybdopterin synthase sulfur carrier subunit -
  JCM16456_RS10805 moaC 2444812..2445291 (-) 480 WP_068714224.1 cyclic pyranopterin monophosphate synthase MoaC -
  JCM16456_RS10810 moaB 2445304..2445810 (-) 507 WP_068714225.1 molybdenum cofactor biosynthesis protein B -
  JCM16456_RS10815 moaA 2445876..2446865 (-) 990 WP_068716036.1 GTP 3',8-cyclase MoaA -
  JCM16456_RS10820 yvcK 2447172..2448062 (+) 891 WP_068716038.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  JCM16456_RS10825 luxU 2448051..2448389 (-) 339 WP_068714226.1 quorum-sensing phosphorelay protein LuxU -
  JCM16456_RS10830 luxO 2448396..2449805 (-) 1410 WP_068714228.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  JCM16456_RS10835 uvrB 2450087..2452117 (-) 2031 WP_068714230.1 excinuclease ABC subunit UvrB -
  JCM16456_RS10845 - 2453064..2453732 (+) 669 WP_068714232.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52396.05 Da        Isoelectric Point: 5.9107

>NTDB_id=66410 JCM16456_RS10830 WP_068714228.1 2448396..2449805(-) (luxO) [Vibrio tritonius strain AM2]
MQLEYPTQKAKYLLMVEDTASVAALYRSYLLPLEIDIKVVGTGREAIESIAQREPDLILLDLRLPDMTGMDVLHAVKLKH
PDVPVVFMTAHGSIDTAVEAMRHGAKDFLIKPCEADRLRVTVNNAIRKASKLKNETDDPREQNYQGFIGSSQTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAVHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAEAADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLSSEVVERFQHYGWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNRPIEPRV
EVISEKVESGTLSVHDIFPLWLTEKQAIEKAIEACDGNIPKAAGYLDVSPSTIYRKLQSWNEKEKEKEK

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=66410 JCM16456_RS10830 WP_068714228.1 2448396..2449805(-) (luxO) [Vibrio tritonius strain AM2]
ATGCAATTAGAATACCCAACTCAAAAAGCAAAATATCTGCTCATGGTTGAGGATACCGCATCGGTAGCGGCACTGTACCG
TTCTTATCTATTGCCTTTAGAAATTGATATTAAGGTGGTAGGGACTGGACGAGAAGCTATCGAAAGTATTGCTCAACGAG
AGCCGGACTTGATCCTTCTTGACTTACGTTTACCGGATATGACTGGTATGGACGTATTACATGCAGTAAAACTCAAGCAT
CCAGATGTGCCAGTGGTCTTTATGACGGCGCATGGCTCGATAGATACTGCTGTAGAAGCAATGCGACATGGCGCAAAAGA
CTTCTTAATCAAACCCTGCGAAGCAGACCGCTTACGTGTCACAGTGAACAACGCAATTCGTAAAGCAAGTAAGCTTAAGA
ATGAAACGGATGACCCGCGTGAACAAAATTACCAAGGTTTTATCGGTAGTAGTCAGACCATGCAAGCAGTTTACCGAACT
ATCGACTCTGCGGCATCGAGTAAGGCAAGTATCTTTATTACGGGTGAAAGTGGTACTGGTAAAGAAGTGTGTGCTGAGGC
TGTTCATGCGGCGAGTAAACGGGGCGATAAACCTTTTATTGCGATTAACTGTGCAGCGATTCCCAAAGACTTGATCGAAA
GTGAACTGTTTGGTCATGTGAAAGGCGCATTTACTGGCGCTGCAACGGATCGCCAAGGGGCGGCAGAGGCTGCCGATGGT
GGTACGCTGTTTTTGGATGAATTGTGCGAAATGGATTTGGATCTGCAAACCAAATTACTGCGCTTTATCCAAACTGGCAC
CTTCCAGAAGGTAGGCTCTTCTAAAATGAAGAGCGTTGATGTGCGTTTTGTTTGTGCAACTAACCGTGACCCATGGAAAG
AGGTCCAAGAAGGTCGCTTCCGAGAAGATTTGTACTATCGTTTATACGTTATCCCGTTGCACTTACCACCACTGCGCGAA
CGTGGTGATGATGTGATTGAAATTGCTTACTCATTGCTTGGCTTTATGTCAAAAGAGGAGGGCAAAGGGTTTGTTCGTCT
TTCATCAGAAGTTGTCGAGCGATTCCAGCATTATGGTTGGCCAGGTAACGTGCGGCAGTTGCAAAACGTATTACGAAATG
TGGTGGTATTAAATGAGGGTCGTGAAATTACCCTCAATATGTTACCGCCACCGTTAAACCGTCCCATAGAACCTCGCGTA
GAAGTGATCTCTGAAAAAGTAGAAAGCGGCACATTATCAGTACACGATATTTTTCCGTTATGGTTAACAGAAAAACAGGC
TATCGAGAAAGCGATTGAAGCTTGTGATGGCAATATTCCTAAAGCTGCGGGGTATTTGGATGTCAGTCCATCAACTATTT
ACCGCAAGTTACAAAGCTGGAATGAAAAAGAAAAAGAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.814

95.309

0.846
  pilR Pseudomonas aeruginosa PAK

38.667

95.949

0.371

Multiple sequence alignment