Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MOO46_RS05410 Genome accession   NZ_CP093362
Coordinates   1057634..1058155 (-) Length   173 a.a.
NCBI ID   WP_249510672.1    Uniprot ID   -
Organism   Apilactobacillus apisilvae strain SG5_A10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1052634..1063155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOO46_RS05390 (MOO46_05390) dnaB 1053306..1054673 (-) 1368 WP_249510668.1 replicative DNA helicase -
  MOO46_RS05395 (MOO46_05395) rplI 1054704..1055156 (-) 453 WP_249510669.1 50S ribosomal protein L9 -
  MOO46_RS05400 (MOO46_05400) - 1055219..1057255 (-) 2037 WP_249510670.1 DHH family phosphoesterase -
  MOO46_RS05405 (MOO46_05405) rpsR 1057363..1057605 (-) 243 WP_249510671.1 30S ribosomal protein S18 -
  MOO46_RS05410 (MOO46_05410) ssb 1057634..1058155 (-) 522 WP_249510672.1 single-stranded DNA-binding protein Machinery gene
  MOO46_RS05415 (MOO46_05415) rpsF 1058199..1058489 (-) 291 WP_249510673.1 30S ribosomal protein S6 -
  MOO46_RS05420 (MOO46_05420) - 1058655..1059743 (-) 1089 WP_249510674.1 hypothetical protein -
  MOO46_RS05425 (MOO46_05425) - 1059761..1060810 (-) 1050 WP_249510675.1 hypothetical protein -
  MOO46_RS05430 (MOO46_05430) - 1060927..1062048 (-) 1122 WP_249510676.1 C39 family peptidase -
  MOO46_RS05435 (MOO46_05435) - 1062166..1063029 (+) 864 WP_396121398.1 NlpC/P60 family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19111.44 Da        Isoelectric Point: 4.7146

>NTDB_id=664052 MOO46_RS05410 WP_249510672.1 1057634..1058155(-) (ssb) [Apilactobacillus apisilvae strain SG5_A10]
MINRTTLTGRLTRDVDLRYTPSGAAVGNFTLAVDRRFTNQNGERDADFINCVIWRKSAENFANFTHKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVVENFALLEPRSANHSNNNNGAPQNNSGNNNPFENQNNNQPSNNGGNSNNGNNMNNNSADPFASS
GDQIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=664052 MOO46_RS05410 WP_249510672.1 1057634..1058155(-) (ssb) [Apilactobacillus apisilvae strain SG5_A10]
ATGATTAATCGTACAACTTTAACAGGTAGATTAACTCGGGACGTTGACTTGCGATACACTCCAAGCGGTGCCGCTGTAGG
TAATTTTACCTTAGCTGTTGATCGTAGATTTACTAACCAAAATGGTGAAAGAGATGCAGATTTTATTAACTGTGTTATCT
GGCGTAAATCCGCTGAAAATTTTGCTAACTTCACACATAAGGGTTCTTTAGTTGGAATTGATGGCCGTATTCAAACCAGA
AATTACGAAAATCAACAAGGCCAAAGAGTCTATGTCACTGAAGTAGTTGTTGAAAACTTTGCTTTGTTAGAACCTCGTTC
AGCAAATCATAGTAACAACAATAACGGCGCTCCTCAGAACAATTCAGGAAATAACAATCCTTTTGAAAACCAAAACAACA
ACCAACCATCTAATAATGGCGGTAACAGTAATAATGGAAACAACATGAATAATAATTCAGCTGATCCATTTGCTAGTTCT
GGTGATCAAATTGATATTTCCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

66.667

100

0.671
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.906

100

0.595