Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG379_RS18450 Genome accession   NZ_CP108613
Coordinates   4036064..4036663 (-) Length   199 a.a.
NCBI ID   WP_099173476.1    Uniprot ID   A0ABU8A4N2
Organism   Streptomyces sp. NBC_01166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4031064..4041663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG379_RS18430 (OG379_18460) - 4031834..4032409 (-) 576 WP_099173480.1 SigE family RNA polymerase sigma factor -
  OG379_RS18435 (OG379_18465) - 4032769..4033833 (-) 1065 WP_405664171.1 aspartate-semialdehyde dehydrogenase -
  OG379_RS18440 (OG379_18470) - 4033830..4035101 (-) 1272 WP_393756102.1 aspartate kinase -
  OG379_RS18445 (OG379_18475) - 4035321..4035980 (-) 660 WP_393756103.1 DUF5063 domain-containing protein -
  OG379_RS18450 (OG379_18480) recR 4036064..4036663 (-) 600 WP_099173476.1 recombination mediator RecR Machinery gene
  OG379_RS18455 (OG379_18485) - 4036725..4037060 (-) 336 WP_356713924.1 YbaB/EbfC family nucleoid-associated protein -
  OG379_RS18460 (OG379_18490) - 4037422..4038210 (+) 789 WP_393756106.1 SLATT domain-containing protein -
  OG379_RS18465 (OG379_18495) - 4038255..4038905 (-) 651 WP_405664176.1 hypothetical protein -
  OG379_RS18470 (OG379_18500) - 4039016..4039729 (-) 714 WP_405664178.1 GntR family transcriptional regulator -
  OG379_RS18475 (OG379_18505) - 4039828..4041201 (-) 1374 WP_405664181.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21929.24 Da        Isoelectric Point: 5.1777

>NTDB_id=664029 OG379_RS18450 WP_099173476.1 4036064..4036663(-) (recR) [Streptomyces sp. NBC_01166]
MYEGVVQELIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCEICGNVAQQEQCGICRDARRDRSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=664029 OG379_RS18450 WP_099173476.1 4036064..4036663(-) (recR) [Streptomyces sp. NBC_01166]
TTGTACGAAGGCGTGGTTCAGGAGCTGATCGACGAGCTGGGCAGGCTGCCGGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTACGCCGTCTGGCCCATGCCCTTCTCGAGGTCAAGGACAAGGTCC
GCTTCTGCGAGATCTGCGGCAACGTCGCACAGCAGGAGCAGTGCGGCATCTGCCGCGACGCGCGCCGTGACCGCTCGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGTCCCGACGATCTGCGCATCAGGGAGCTGCTGGCCCGGCTCGCGGACGGCT
CCATCACGGAGCTGATCCTCGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCCACGTACCTCGCCCGGATGGTCAAG
CCGATGGGCCTGCGGGTCACACGGCTGGCCAGCGGGCTGCCCGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGGCGGCTGCTCGATGTGTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452