Detailed information NTG0066399

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JCM16456_RS02465
• Genome accession: NZ_AP014635
• Coordinates: 531984..532985 (+)
• Length: 333 a.a.
• NCBI ID: WP_068712068.1
• Uniprot ID: -
• Organism: Vibrio tritonius strain AM2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 526984..537985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JCM16456_RS02430	ftsB	527092..527373 (+)	282	WP_068712059.1	cell division protein FtsB	-
JCM16456_RS02435	ispD	527373..528074 (+)	702	WP_068712060.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JCM16456_RS02440	ispF	528071..528547 (+)	477	WP_068712061.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JCM16456_RS02445	truD	528567..529613 (+)	1047	WP_068712062.1	tRNA pseudouridine(13) synthase TruD	-
JCM16456_RS02450	surE	529606..530361 (+)	756	WP_068712064.1	5'/3'-nucleotidase SurE	-
JCM16456_RS02455	-	530366..530992 (+)	627	WP_068712066.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JCM16456_RS02460	-	530992..531906 (+)	915	WP_068712067.1	peptidoglycan DD-metalloendopeptidase family protein	-
JCM16456_RS02465	rpoS	531984..532985 (+)	1002	WP_068712068.1	RNA polymerase sigma factor RpoS	Regulator
JCM16456_RS02470	mutS	533064..535628 (-)	2565	WP_068712069.1	DNA mismatch repair protein MutS	-
JCM16456_RS02475	-	535713..536198 (+)	486	WP_068715848.1	CinA family protein	-
JCM16456_RS02480	recA	536355..537404 (+)	1050	WP_068712071.1	recombinase RecA	Machinery gene
JCM16456_RS02485	recX	537475..537942 (+)	468	WP_068715850.1	recombination regulator RecX	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 38330.15 Da
• Isoelectric Point: 4.4454

>NTDB_id=66399 JCM16456_RS02465 WP_068712068.1 531984..532985(+) (rpoS) [Vibrio tritonius strain AM2]
MSISNTATKVENFEYDRDVIETDNELTTTSEESSNDTDSNDDVREEFDVSSKSLDATQMYLSEIGFSPLLTAEEEVLYAR
RALRGCEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQ
TRTIRLPIHVVKELNIYLRTARELSQRLDHEPTAEEIALELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDA
NNSDPEVSTQDDDIRDSLMNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQG
LSMESLFNVEVEM

Nucleotide

• Length: 1002 bp

>NTDB_id=66399 JCM16456_RS02465 WP_068712068.1 531984..532985(+) (rpoS) [Vibrio tritonius strain AM2]
ATGAGTATCAGCAATACAGCCACTAAAGTTGAAAATTTCGAATATGACCGTGACGTAATTGAAACGGATAACGAATTAAC
AACAACTAGTGAAGAAAGTTCTAATGACACGGACAGCAATGATGACGTTCGCGAAGAGTTTGATGTTTCATCCAAAAGTT
TAGATGCAACACAGATGTATTTAAGCGAAATCGGCTTTTCTCCTTTGTTGACCGCAGAAGAAGAAGTTCTCTATGCACGC
CGCGCTTTGCGTGGTTGTGAAGCCGCCAGAAAACGTATGATCGAAAGTAACTTACGTTTAGTGGTTAAAATTTCTCGCCG
CTACAGTAATCGTGGTTTAGCTCTTCTGGATCTTATTGAAGAAGGTAACCTTGGTTTGATTCGAGCAGTGGAAAAATTCG
ACCCAGAACGCGGATTCCGTTTTTCAACTTACGCAACATGGTGGATTCGTCAAACGATTGAACGCGCTTTGATGAATCAA
ACTCGCACCATTCGCTTACCTATCCATGTTGTGAAAGAACTCAATATTTATCTGCGTACTGCTCGTGAACTATCACAACG
TTTAGACCATGAACCAACAGCGGAAGAGATCGCTCTTGAGCTTGATAAGCCGGTAGACGATGTGAGCAAAATGCTTCGTT
TGAACGAACGTATTAGCTCTGTTGACACGCCAATCGGTGGTGATGGGGATAAAGCATTGCTGGATATTATTCCAGATGCA
AACAACTCAGATCCTGAAGTTTCTACTCAAGATGATGATATTCGTGATTCTCTAATGAATTGGTTAGATGAACTCAATCC
AAAACAGAAAGAAGTGTTAGCACGTCGTTTTGGCTTACTTGGCTATGAACCATCGACTCTTGAAGAGGTGGGACGTGAGA
TTAATCTAACCCGAGAACGAGTTCGTCAAATTCAAGTGGAAGGATTACGCCGTTTGAGAGAGATCCTGATGAAACAAGGC
TTAAGTATGGAATCTCTGTTCAACGTTGAAGTAGAAATGTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (55-85)

• Sigma-70, region 4 (Sigma70_r4) (261-314)

• Sigma-70 region 3 (Sigma70_r3) (173-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.688	100	0.877