Detailed information NTG0663967

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MN179_RS25300
• Genome accession: NZ_CP093357
• Coordinates: 5416395..5417267 (+)
• Length: 290 a.a.
• NCBI ID: WP_241940121.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain E131
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5411395..5422267

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MN179_RS25285 (MN179_25285)	-	5412778..5413242 (-)	465	WP_021205141.1	pilin	-
MN179_RS25290 (MN179_25290)	pilB	5413473..5415173 (+)	1701	WP_021205142.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MN179_RS25295 (MN179_25295)	pilC	5415177..5416394 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
MN179_RS25300 (MN179_25300)	pilD	5416395..5417267 (+)	873	WP_241940121.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
MN179_RS25305 (MN179_25305)	coaE	5417264..5417875 (+)	612	WP_023114838.1	dephospho-CoA kinase	-
MN179_RS25310 (MN179_25310)	yacG	5417872..5418072 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
MN179_RS25315 (MN179_25315)	-	5418109..5418318 (-)	210	WP_003094660.1	hypothetical protein	-
MN179_RS25320 (MN179_25320)	-	5418424..5419113 (-)	690	WP_241940122.1	energy-coupling factor ABC transporter permease	-
MN179_RS25325 (MN179_25325)	-	5419110..5419580 (-)	471	WP_019486073.1	hypothetical protein	-
MN179_RS25330 (MN179_25330)	-	5419577..5420002 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
MN179_RS25335 (MN179_25335)	-	5420135..5420764 (+)	630	WP_003120948.1	DUF1780 domain-containing protein	-
MN179_RS25340 (MN179_25340)	-	5420761..5421210 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
MN179_RS25345 (MN179_25345)	-	5421236..5421406 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31889.90 Da
• Isoelectric Point: 7.7053

>NTDB_id=663967 MN179_RS25300 WP_241940121.1 5416395..5417267(+) (pilD) [Pseudomonas aeruginosa strain E131]
MTLLDYLASHPLAYVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=663967 MN179_RS25300 WP_241940121.1 5416395..5417267(+) (pilD) [Pseudomonas aeruginosa strain E131]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTATGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55	96.552	0.531
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469