Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG448_RS14095 Genome accession   NZ_CP108609
Coordinates   3073898..3074497 (-) Length   199 a.a.
NCBI ID   WP_356425516.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01171     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3068898..3079497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG448_RS14075 (OG448_14045) - 3069722..3070306 (-) 585 WP_350901140.1 SigE family RNA polymerase sigma factor -
  OG448_RS14080 (OG448_14050) - 3070752..3071810 (-) 1059 WP_391297508.1 aspartate-semialdehyde dehydrogenase -
  OG448_RS14085 (OG448_14055) - 3071810..3073087 (-) 1278 WP_030817256.1 aspartate kinase -
  OG448_RS14090 (OG448_14060) - 3073246..3073905 (-) 660 WP_405553975.1 DUF5063 domain-containing protein -
  OG448_RS14095 (OG448_14065) recR 3073898..3074497 (-) 600 WP_356425516.1 recombination mediator RecR Machinery gene
  OG448_RS14100 (OG448_14070) - 3074550..3074891 (-) 342 WP_391297503.1 YbaB/EbfC family nucleoid-associated protein -
  OG448_RS14105 (OG448_14075) - 3075467..3076171 (+) 705 WP_405558799.1 SLATT domain-containing protein -
  OG448_RS14110 (OG448_14080) - 3076322..3076783 (-) 462 WP_405553977.1 hypothetical protein -
  OG448_RS14115 (OG448_14085) - 3077333..3078724 (+) 1392 WP_405553979.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21713.12 Da        Isoelectric Point: 5.1616

>NTDB_id=663883 OG448_RS14095 WP_356425516.1 3073898..3074497(-) (recR) [Streptomyces sp. NBC_01171]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVKRLAHALLEVKAKVRFCAACGNVAQEELCNICRDPRRDLSV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=663883 OG448_RS14095 WP_356425516.1 3073898..3074497(-) (recR) [Streptomyces sp. NBC_01171]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTCCTGCAGGCCGAGCCGACGGACGTGAAACGGCTCGCGCACGCCCTGCTGGAGGTCAAGGCCAAGGTCC
GCTTCTGCGCGGCCTGCGGCAACGTGGCGCAGGAAGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTCTCGGTC
ATCTGTGTGGTCGAGGAGCCCAAGGACGTCGTGGCCATCGAGCGCACCCGTGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGCGCCATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGGATCAGGGAACTCCTGGCCCGCCTCGCCGACGGCA
CCGTCACGGAGCTGATCCTGGCCACCGACCCCAATCTCGAAGGCGAGGCCACGGCGACGTACCTCGCCCGCATGATCAAG
CCCATGGGTCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTCGGCGGGGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462