Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MNO14_RS03030 Genome accession   NZ_CP093340
Coordinates   672988..674385 (-) Length   465 a.a.
NCBI ID   WP_241945325.1    Uniprot ID   -
Organism   Luteimonas sp. S4-F44     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 667988..679385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO14_RS03015 (MNO14_03015) - 668862..668951 (-) 90 Protein_601 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MNO14_RS03020 (MNO14_03020) - 669404..670885 (-) 1482 WP_241945323.1 ATP-binding protein -
  MNO14_RS03025 (MNO14_03025) - 670971..672905 (+) 1935 WP_241945324.1 diguanylate cyclase -
  MNO14_RS03030 (MNO14_03030) pilR 672988..674385 (-) 1398 WP_241945325.1 sigma-54 dependent transcriptional regulator Regulator
  MNO14_RS03035 (MNO14_03035) - 674565..676160 (-) 1596 WP_241945326.1 ATP-binding protein -
  MNO14_RS03040 (MNO14_03040) sucC 676334..677497 (+) 1164 WP_241945327.1 ADP-forming succinate--CoA ligase subunit beta -
  MNO14_RS03045 (MNO14_03045) sucD 677524..678396 (+) 873 WP_241945328.1 succinate--CoA ligase subunit alpha -
  MNO14_RS03050 (MNO14_03050) - 678648..678950 (+) 303 WP_241945329.1 type II toxin-antitoxin system CcdA family antitoxin -
  MNO14_RS03055 (MNO14_03055) - 678947..679261 (+) 315 WP_241945330.1 CcdB family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 49971.24 Da        Isoelectric Point: 6.7279

>NTDB_id=663800 MNO14_RS03030 WP_241945325.1 672988..674385(-) (pilR) [Luteimonas sp. S4-F44]
MSEHRSALIVDDEHDIRELLVLTLGRMSLRTDTAPNLAAARELLANGHYDLCLTDMRLPDGSGLDLVGEINTRFPGTPVA
VITAYGNVEAAVDALKAGAFDFVSKPVDINVLRGLVRQALELGERGRHSDDAAGGRLLGKSEAMVTLRNTLAKVARSQAP
VCINGESGTGKELVARMLHAQSARAGGPFVPVNCGAIPNELMESEFFGHRKGSFTGAHSDKPGLFQAAEGGTLFLDEVAE
LPLPMQVKLLRAIQEKSVRPVGASTEVQVDVRILSATHKDLATLVDEGRFRHDLYYRINVIGLTVPPLRERAGDLPLLSD
AILRRLAQAMRRPAPVLAQDAIAALEAHAFPGNIRELENILERALAMADGDRITAADLHLPTAQPGMAGSPAAAAQAGTR
LPPDPRTLSPYETAGTALPSYIEDIERAAIQQALQENRYNKTKTAAVLGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=663800 MNO14_RS03030 WP_241945325.1 672988..674385(-) (pilR) [Luteimonas sp. S4-F44]
ATGAGCGAGCACCGCAGCGCCCTGATCGTCGACGACGAACACGACATCCGCGAACTGCTGGTCCTCACGCTGGGCCGCAT
GAGCCTGCGTACCGACACCGCGCCCAACCTCGCGGCCGCCCGCGAGTTGCTGGCCAACGGCCACTACGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGTCTGGACCTGGTCGGGGAGATCAACACGCGCTTTCCTGGCACTCCGGTCGCG
GTGATCACCGCCTACGGCAACGTCGAGGCCGCAGTCGATGCATTGAAGGCCGGCGCGTTTGATTTCGTCAGCAAGCCGGT
CGACATCAACGTGCTGCGCGGTCTCGTACGCCAGGCACTGGAACTGGGCGAACGCGGCCGCCACAGCGACGACGCGGCCG
GTGGTCGCCTGCTCGGCAAGTCCGAGGCCATGGTCACGCTGCGCAACACGCTGGCCAAGGTCGCGCGCAGCCAGGCACCG
GTCTGCATTAACGGCGAATCGGGCACCGGCAAGGAGCTCGTCGCGCGCATGCTGCATGCGCAGAGCGCACGCGCCGGCGG
TCCGTTCGTGCCGGTCAACTGCGGCGCGATTCCCAACGAACTGATGGAAAGCGAGTTCTTCGGACATCGCAAGGGCAGCT
TCACCGGCGCACACAGCGACAAGCCTGGCCTATTCCAGGCGGCCGAAGGCGGCACGCTGTTCCTCGACGAAGTGGCCGAA
CTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCCTCGACCGAAGT
GCAGGTCGACGTGCGCATCCTGTCGGCCACCCACAAGGACCTGGCAACGCTGGTCGACGAAGGCCGCTTCCGCCACGACC
TCTACTACCGCATCAACGTCATCGGCTTGACCGTGCCGCCACTGCGCGAGCGTGCCGGCGACCTGCCGCTGCTGTCGGAC
GCTATTTTGCGCCGGCTCGCCCAGGCCATGCGCCGTCCGGCGCCGGTGCTTGCGCAGGACGCGATCGCCGCCCTTGAGGC
GCATGCCTTCCCCGGCAATATCCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCGATGGCCGACGGCGACCGCATCA
CCGCTGCCGACTTGCACCTGCCGACGGCCCAGCCCGGCATGGCCGGCAGCCCCGCCGCTGCAGCCCAGGCGGGGACCCGG
CTGCCGCCCGACCCGCGCACACTCAGTCCCTACGAGACCGCCGGCACGGCCCTGCCCTCCTACATCGAGGACATCGAGCG
CGCCGCGATCCAGCAAGCGCTGCAGGAAAACCGCTACAACAAGACCAAGACCGCGGCCGTGCTCGGCATCACCTTCCGCG
CCCTGCGCTACAAGCTCAAGAAACTCGGCATCGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(137-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.123

99.57

0.609
  pilR Acinetobacter baumannii strain A118

48.268

99.355

0.48