Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AS4_RS19490 Genome accession   NZ_AP014630
Coordinates   4171206..4171835 (+) Length   209 a.a.
NCBI ID   WP_096735222.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain NBRC 110550     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4166206..4176835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS4_RS19475 (AS4_39280) - 4167486..4167935 (-) 450 WP_096735219.1 hypothetical protein -
  AS4_RS19480 (AS4_39290) - 4168095..4168880 (-) 786 WP_096735220.1 NAD-dependent epimerase/dehydratase family protein -
  AS4_RS19485 (AS4_39300) recG 4168940..4170985 (+) 2046 WP_096735221.1 ATP-dependent DNA helicase RecG -
  AS4_RS19490 comF 4171206..4171835 (+) 630 WP_096735222.1 ComF family protein Machinery gene
  AS4_RS19495 (AS4_39330) - 4171888..4172286 (-) 399 WP_167468960.1 NUDIX domain-containing protein -
  AS4_RS19500 (AS4_39340) - 4172364..4172981 (-) 618 WP_096735223.1 TIGR00730 family Rossman fold protein -
  AS4_RS19505 (AS4_39350) - 4173140..4174153 (+) 1014 WP_004816845.1 magnesium and cobalt transport protein CorA -
  AS4_RS19510 (AS4_39360) - 4174278..4174565 (-) 288 WP_096735224.1 toluene tolerance protein -
  AS4_RS19515 (AS4_39370) - 4174593..4175213 (-) 621 WP_004816842.1 phospholipid-binding protein MlaC -
  AS4_RS19520 (AS4_39380) - 4175235..4175912 (-) 678 WP_004816841.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AS4_RS19525 (AS4_39390) mlaE 4175912..4176691 (-) 780 WP_004725633.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24521.76 Da        Isoelectric Point: 9.5477

>NTDB_id=66378 AS4_RS19490 WP_096735222.1 4171206..4171835(+) (comF) [Acinetobacter guillouiae strain NBRC 110550]
MLQFTNQLLHKCVQSLSPCLLCGIDRQQQHSLCNTCWNELPWYKQHIERHQHQIVCAHRYDFPIDRIIQVYKYEQQLQYQ
RLLAQSLLNLSLPKIQAIVPMPISTARLKERGYNQMLIIAKIMARQLNIPVWQPVIREAQHSQKGLSRIERLENIEYQFK
MIKTEKRKYKKVLIIDDVVTTGSSIHALTRALENLGCQQIYSVCIAAAQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=66378 AS4_RS19490 WP_096735222.1 4171206..4171835(+) (comF) [Acinetobacter guillouiae strain NBRC 110550]
ATGCTCCAATTTACCAATCAACTTCTCCATAAATGCGTACAAAGTCTTTCCCCTTGCCTGCTTTGTGGAATAGACCGACA
ACAACAGCATTCTCTTTGTAACACGTGTTGGAACGAACTTCCTTGGTATAAGCAGCATATAGAACGGCATCAACACCAGA
TTGTTTGTGCTCACCGTTACGACTTCCCAATTGATCGCATCATCCAAGTCTATAAATATGAACAACAACTGCAATATCAG
AGACTATTGGCACAAAGTTTATTGAATTTAAGCCTACCTAAAATTCAAGCCATTGTTCCTATGCCAATTTCTACTGCTCG
TTTAAAAGAACGTGGCTACAATCAAATGCTGATTATCGCCAAAATCATGGCAAGGCAATTAAATATCCCAGTATGGCAAC
CCGTGATTCGAGAAGCACAACATTCACAAAAAGGTTTAAGTAGAATTGAGCGCTTAGAAAATATTGAATATCAATTTAAA
ATGATCAAAACAGAAAAAAGAAAATATAAAAAAGTACTGATTATTGACGATGTCGTGACCACAGGCAGTTCAATTCATGC
TTTAACCCGTGCTTTAGAAAACTTAGGCTGCCAGCAGATTTATAGCGTGTGCATTGCCGCAGCTCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

57.692

99.522

0.574
  comF Acinetobacter baumannii D1279779

57.212

99.522

0.569

Multiple sequence alignment