Detailed information NTG0663631

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG543_RS08160
• Genome accession: NZ_CP108592
• Coordinates: 1859199..1860290 (-)
• Length: 363 a.a.
• NCBI ID: WP_405635058.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01178
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1854199..1865290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG543_RS08150 (OG543_08155)	rcrP	1855522..1857255 (+)	1734	WP_398388769.1	ABC transporter ATP-binding protein	Regulator
OG543_RS08155 (OG543_08160)	rcrQ	1857255..1859183 (+)	1929	WP_398388768.1	ABC transporter ATP-binding protein	Regulator
OG543_RS08160 (OG543_08165)	rpoS	1859199..1860290 (-)	1092	WP_405635058.1	RNA polymerase sigma factor	Regulator
OG543_RS08165 (OG543_08170)	dnaG	1860493..1862412 (-)	1920	WP_405635060.1	DNA primase	-
OG543_RS08170 (OG543_08175)	-	1862506..1863765 (-)	1260	WP_405635062.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 363 a.a.
• Molecular weight: 40707.33 Da
• Isoelectric Point: 6.1356

>NTDB_id=663631 OG543_RS08160 WP_405635058.1 1859199..1860290(-) (rpoS) [Streptomyces sp. NBC_01178]
MQTRTVTTTTEPIAAIPAQHRARHHPETTAGPSGYAPEAVMVEATHLPEPPEPRGRADSGGPTSDLFRQYLREIGRIPLL
TAAEEVELARRVEAGLFAEERLAGTPDLDSRLAGDLDRLVVMGRTAKRRLIEANLRLVVSIAKRYVGRGLTMLDLVQEGN
LGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAAELDL
TPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAPSPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLEDGR
PRTLEEIGRIFGVTRERIRQIESKTLTRLRDHAYADQLRGYLD

Nucleotide

• Length: 1092 bp

>NTDB_id=663631 OG543_RS08160 WP_405635058.1 1859199..1860290(-) (rpoS) [Streptomyces sp. NBC_01178]
GTGCAGACCCGGACCGTGACGACCACGACCGAGCCCATCGCGGCCATCCCGGCGCAGCACAGGGCCCGGCACCACCCGGA
GACCACAGCCGGCCCGTCCGGATACGCCCCCGAGGCAGTCATGGTCGAAGCGACCCACCTCCCCGAACCCCCGGAGCCCC
GGGGCCGCGCGGACTCCGGCGGCCCCACCTCCGACCTGTTCCGGCAGTACCTGCGCGAGATCGGCCGCATCCCGCTGCTC
ACCGCCGCCGAGGAGGTCGAGCTGGCCCGCCGGGTGGAGGCCGGACTCTTCGCCGAGGAGCGCCTCGCGGGCACCCCCGA
TCTCGACTCCCGCCTCGCCGGGGACCTGGACCGGCTCGTGGTGATGGGCCGCACCGCCAAGCGCCGCCTCATCGAGGCCA
ACCTCCGCCTCGTCGTCTCCATCGCCAAACGCTACGTGGGCCGCGGGCTGACCATGCTCGACCTGGTCCAGGAGGGGAAC
CTCGGGCTGATCCGGGCGGTGGAGAAGTTCGACTACGCGCGGGGCTACAAGTTCTCCACGTACGCGACCTGGTGGATCCG
CCAGGCCATGTCCCGCGCCCTGGCCGACCAGGCCCGCACCATCCGCGTCCCGGTCCACGTGGTGGAGCTGATCAACCGCG
TGGTGCGCGTCCAGCGCCGGCTCCTCCAGGAACGCGGCGTCGAGCCGACCGCCGAGGACATCGCCGCCGAGCTGGACCTG
ACGCCCGAACGGGTCACCGAAGTCCTGCGCCTGGCCCAGGAACCGGTCTCCCTGCACGCCCCCGTCGGCGAGGAGGACGA
CGTCTCCTTCGGCGACCTCATCGAGGACGGCGACGCCCCCTCGCCCGTGGAGTCCGCCGCCTTCCTGCTGCTGCGCGAAC
ACCTGGAGGCGGTGCTCTCCACCCTCGGCGAACGCGAACGCAAGGTGGTCCAACTGCGGTACGGCCTGGAGGACGGGCGG
CCCCGCACCCTGGAGGAGATAGGACGGATCTTCGGCGTGACGCGCGAACGCATCCGCCAGATCGAGTCCAAGACCCTCAC
CAGACTGCGGGACCACGCCTACGCCGACCAGCTCCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (65-98)

• Sigma-70 region 2 (Sigma70_r2) (130-199)

• Sigma-70, region 4 (Sigma70_r4) (298-350)

• Sigma-70 region 3 (Sigma70_r3) (209-285)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	44.966	82.094	0.369